Description

major histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:HGNC:4933]

Synonyms

D6S204, HLA-JY3, PSORS1

Gene

This transcript is a product of gene ENSG00000237022

This gene has 12 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
HLA-C-001ENST000004381711578366 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A7LB40 B2BD81 C7FDT1
D3JTA8 D3U735 D3U755
D5M8B2 D5M8C1 D6MLD1
D6MLF5 D7RJ40 E2DHA6
E2GJG6 E2GJH1 E2GJH3
E5D6M5 E7BYC5 F2VNN9
F4YU72 F4YU77 F4YU78
F4YU98 F4YZV9 F6KRW5
F8R8L8 F8SY70 G1ENS7
G1EQL8 G1EQM0 G1EQM7
G3D6G3 G9HW89 H9BYV3
I2GUK8 I6NVQ9 J7F665
K7P4Z7 K7P5S6 K7QUR5
M9P8H4 M9P8I3 M9P8R2
M9P915 M9P950 M9P973
M9P9B4 M9P9C9 M9P9P8
M9P9U1 M9PAC2 O19574
O19575 O19654 O78179
P30499 P30510 Q29914
Q29960 Q30193 Q30194
Q5K095 Q7JFH7 Q9MYH7
Q9MYH9 Q9TNZ7 R4QIQ2
U5YC39 U5YC63 U5YC67
U5YC89 U5YCH8 U5YD77
U5YEV4 U5YEZ6 U5YF18
U5YF39 U5YF66 U5YF74
V5LKW9 V5LM38 V5NVY9
W6MX28
NM_002117
NP_002108
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-003ENST000004538091552372 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A7LB40 B2BD81 C7FDT1
D3JTA8 D3U735 D3U755
D5M8B2 D5M8C1 D6MLD1
D6MLF5 D7RJ40 E2DHA6
E2GJG6 E2GJH1 E2GJH3
E5D6M5 E7BYC5 F2VNN9
F4YU72 F4YU77 F4YU78
F4YU98 F4YZV9 F6KRW5
F8R8L8 F8SY70 G1ENS7
G1EQL8 G1EQM0 G1EQM7
G3D6G3 G9HW89 H9BYV3
I2GUK8 I6NVQ9 J7F665
K7P4Z7 K7P5S6 K7QUR5
M9P8H4 M9P8I3 M9P8R2
M9P915 M9P950 M9P973
M9P9B4 M9P9C9 M9P9P8
M9P9U1 M9PAC2 O19574
O19575 O19654 Q29914
Q30193 Q30194 Q5K095
Q7JFH7 Q9MYH7 Q9MYH9
Q9TNZ7 R4QIQ2 U5YC39
U5YC63 U5YC67 U5YC89
U5YCH8 U5YD77 U5YEV4
U5YEZ6 U5YF18 U5YF39
U5YF66 U5YF74 V5LKW9
V5LM38 V5NVY9 W6MX28
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-004ENST000004142491530397 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A7LB40 B2BD81 C7FDT1
D3JTA8 D3U735 D3U755
D5M8B2 D5M8C1 D6MLD1
D6MLF5 D7RJ40 E2DHA6
E2GJG6 E2GJH1 E2GJH3
E5D6M5 E7BYC5 F2VNN9
F4YU72 F4YU77 F4YU78
F4YU98 F4YZV9 F6KRW5
F8R8L8 F8SY70 G1ENS7
G1EQL8 G1EQM0 G1EQM7
G3D6G3 G9HW89 H9BYV3
I2GUK8 I6NVQ9 J7F665
K7P4Z7 K7P5S6 K7QUR5
M9P8H4 M9P8I3 M9P8R2
M9P915 M9P950 M9P973
M9P9B4 M9P9C9 M9P9P8
M9P9U1 M9PAC2 O19574
O19575 O19654 Q29914
Q30193 Q30194 Q5K095
Q7JFH7 Q9MYH7 Q9MYH9
Q9TNZ7 R4QIQ2 U5YC39
U5YC63 U5YC67 U5YC89
U5YCH8 U5YD77 U5YEV4
U5YEZ6 U5YF18 U5YF39
U5YF66 U5YF74 V5LKW9
V5LM38 V5NVY9 W6MX28
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-002ENST000004195901460339 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A7LB40 B2BD81 C7FDT1
D3JTA8 D3U735 D3U755
D5M8B2 D5M8C1 D6MLD1
D6MLF5 D7RJ40 E2DHA6
E2GJG6 E2GJH1 E2GJH3
E5D6M5 E7BYC5 F2VNN9
F4YU72 F4YU77 F4YU78
F4YU98 F4YZV9 F6KRW5
F8R8L8 F8SY70 G1ENS7
G1EQL8 G1EQM0 G1EQM7
G3D6G3 G9HW89 H9BYV3
I2GUK8 I6NVQ9 J7F665
K7P4Z7 K7P5S6 K7QUR5
M9P8H4 M9P8I3 M9P8R2
M9P915 M9P950 M9P973
M9P9B4 M9P9C9 M9P9P8
M9P9U1 M9PAC2 O19574
O19575 O19654 Q29914
Q30193 Q30194 Q5K095
Q7JFH7 Q9MYH7 Q9MYH9
Q9TNZ7 R4QIQ2 U5YC39
U5YC63 U5YC67 U5YC89
U5YCH8 U5YD77 U5YEV4
U5YEZ6 U5YF18 U5YF39
U5YF66 U5YF74 V5LKW9
V5LM38 V5NVY9 W6MX28
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-007ENST00000437368782261 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B2BD81 C7FDT1 D3JTA8
D3U735 D3U755 D5M8B2
D5M8C1 D6MLD1 D6MLF5
D7RJ40 E2DHA6 E2GJG6
E2GJH1 E2GJH3 E5D6M5
E7BYC5 F2VNN9 F4YU72
F4YU77 F4YU78 F4YU98
F4YZV9 F6KRW5 F8R8L8
F8SY70 G1ENS7 G1EQL8
G1EQM0 G1EQM7 G3D6G3
G9HW89 H9BYV3 I6NVQ9
J7F665 K7P4Z7 K7P5S6
K7QUR5 M9P8H4 M9P8I3
M9P8R2 M9P915 M9P950
M9P973 M9P9B4 M9P9C9
M9P9P8 M9P9U1 M9PAC2
O19574 O19575 Q29914
Q30193 Q30194 R4QIQ2
U5YC39 U5YC63 U5YC67
U5YC89 U5YCH8 U5YD77
U5YEV4 U5YEZ6 U5YF18
U5YF39 U5YF66 U5YF74
V5LKW9 V5LM38 V5NVY9
W6MX28
-CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-006ENST000004882731536131 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-B2BD81 H9BYV3 O19574
O19575 O19654 Q30193
Q7JFH7 U5YC63 U5YEV4
U5YEZ6 U5YF18 V5LKW9
V5LM38
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-009ENST00000495898966No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-005ENST000004654971874No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-010ENST000004596941276No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-008ENST000004804291073No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-012ENST00000495207858No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-011ENST00000487551752No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 5 Coding exons: 5 Transcript length: 782 bps Translation length: 261 residues

Transcript Support Level

NA

Ensembl version

ENST00000437368.1

Type

Known protein coding

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays