Description

major histocompatibility complex, class II, DQ beta 1 [Source:HGNC Symbol;Acc:HGNC:4944]

Synonyms

CELIAC1, HLA-DQB, IDDM1

About this transcript

This transcript has 5 exons, is annotated with 4 domains and features and is associated with 137 variations.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
HLA-DQB1-002ENST000003990741789269aaENSP00000382025
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-003ENST000004229501734261aaENSP00000414079
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-P01920 U3PYL3 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-001ENST000004161921642261aaENSP00000410107
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-P01920 U3PYL3 NM_001243962
NP_001230891
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-004ENST000004348861484224aaENSP00000393979
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q29967 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-007ENST000004307901219134aaENSP00000388447
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-006ENST00000432856484144aaENSP00000394159
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
HLA-DQB1-008ENST000004908621423136aaENSP00000433300
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---
HLA-DQB1-009ENST00000486521428No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
HLA-DQB1-005ENST000004795704631No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 5 Coding exons: 3 Transcript length: 1,423 bps Translation length: 136 residues

Ensembl version

ENST00000490862.4

Type

Known nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays