Description

major histocompatibility complex, class II, DQ alpha 1 [Source:HGNC Symbol;Acc:HGNC:4942]

Synonyms

CELIAC1, HLA-DQA

NameTranscript IDbpProteinBiotypeCCDSUniProtFlags
HLA-DQA1-001ENST000004180231217255 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZW51 L8E864 O19697
P01909 Q30063 Q30069
Q67AA2 Q67AA3 Q67AA4
Q67AA8 Q67AB0 Q67AB1
Q67AB2 Q67AB3 Q67AF6
Q67AF7 Q67AF8 Q67AF9
Q67AG0 Q9UEF5 Q9UM30
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQA1-005ENST00000444296922255 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZW51 L8E864 O19697
P01909 Q30063 Q30069
Q67AA2 Q67AA3 Q67AA4
Q67AA8 Q67AB0 Q67AB1
Q67AB2 Q67AB3 Q67AF6
Q67AF7 Q67AF8 Q67AF9
Q67AG0 Q9UEF5 Q9UM30
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQA1-203ENST00000547425768255 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-O19697 Q67AA2 Q67AA3
Q67AA4 Q67AA8 Q67AB0
Q67AB1 Q67AB2 Q67AB3
Q9UEF5 Q9UM30
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 5 Coding exons: 4 Transcript length: 1,217 bps Translation length: 255 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P01909

Transcript Support Level

NA

Ensembl version

ENST00000418023.3

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays