Description

major histocompatibility complex, class II, DQ beta 1 [Source:HGNC Symbol;Acc:HGNC:4944]

Synonyms

CELIAC1, HLA-DQB, IDDM1

Gene

This transcript is a product of gene ENSG00000231286

This gene has 9 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
HLA-DQB1-002ENST000003990651788269 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A4FRB6 A9YQ99 B9WPP0
D9UAW6 E7CYG0 F1CK21
F8LFS1 F8LFS2 F8LFS5
F8LFS6 F8LFS8 F8LFT0
F8LFT1 F8LFT6 F8LFT7
G3LHV3 I4EPE3 I4EPE5
I4EPE7 I4EPF0 I4EPF2
I4EPF3 I4EPF4 J9Z7G1
L0BVR1 L0BW09 M4N6J2
M4NBX3 O78045 O78198
Q1HCM4 Q1M313 Q29965
Q30090 Q4VC57 Q4VC58
Q5BLN9 Q67AK6 Q67AK7
Q67AK8 Q67AK9 Q67AL0
Q67AL1 Q67AL2 Q67AL3
Q67AL4 Q67AL5 Q9BCU1
R4KXM9 R4KZS6 R4QQZ0
S4WJ95 S6CPV2 S6CPY7
S6CPY8 S6CQ93 S6CQ95
S6CQQ6 S6CQQ8 V5J9V9
V5JAD7 W5REC1
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-003ENST000004130891734261 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A4FRB6 A9YQ99 B9WPP0
D9UAW6 E7CYG0 F1CK21
F8LFS1 F8LFS2 F8LFS5
F8LFS6 F8LFS8 F8LFT0
F8LFT1 F8LFT6 F8LFT7
G3LHV3 I4EPE3 I4EPE5
I4EPE7 I4EPF0 I4EPF2
I4EPF3 I4EPF4 J9Z7G1
L0BVR1 L0BW09 M4N6J2
M4NBX3 O78045 O78198
P01920 Q1HCM4 Q1M313
Q29965 Q30090 Q4VC57
Q4VC58 Q5BLN9 Q67AK6
Q67AK7 Q67AK8 Q67AK9
Q67AL0 Q67AL1 Q67AL2
Q67AL3 Q67AL4 Q67AL5
Q9BCU1 R4KXM9 R4KZS6
R4QQZ0 S4WJ95 S6B230
S6CPV2 S6CPY7 S6CPY8
S6CQ93 S6CQ95 S6CQQ6
S6CQQ8 V5J9V9 V5JAD7
W5REC1
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-001ENST000003990881642261 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A4FRB6 A9YQ99 B9WPP0
D9UAW6 E7CYG0 F1CK21
F8LFS1 F8LFS2 F8LFS5
F8LFS6 F8LFS8 F8LFT0
F8LFT1 F8LFT6 F8LFT7
G3LHV3 I4EPE3 I4EPE5
I4EPE7 I4EPF0 I4EPF2
I4EPF3 I4EPF4 J9Z7G1
L0BVR1 L0BW09 M4N6J2
M4NBX3 O78045 O78198
P01920 Q1HCM4 Q1M313
Q29965 Q30090 Q4VC57
Q4VC58 Q5BLN9 Q67AK6
Q67AK7 Q67AK8 Q67AK9
Q67AL0 Q67AL1 Q67AL2
Q67AL3 Q67AL4 Q67AL5
Q9BCU1 R4KXM9 R4KZS6
R4QQZ0 S4WJ95 S6B230
S6CPV2 S6CPY7 S6CPY8
S6CQ93 S6CQ95 S6CQQ6
S6CQQ8 V5J9V9 V5JAD7
W5REC1
NM_001243962
NP_001230891
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-004ENST000004245301485224 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A4FRB6 A9YQ99 B9WPP0
D9UAW6 E7CYG0 F1CK21
F8LFS1 F8LFS2 F8LFS5
F8LFS6 F8LFS8 F8LFT0
F8LFT1 F8LFT6 F8LFT7
G3LHV3 I4EPE3 I4EPE5
I4EPE7 I4EPF0 I4EPF2
I4EPF3 I4EPF4 J9Z7G1
L0BVR1 L0BW09 M4N6J2
M4NBX3 O78045 O78198
Q1HCM4 Q1M313 Q29965
Q30090 Q4VC57 Q4VC58
Q5BLN9 Q9BCU1 R4KXM9
R4KZS6 R4QQZ0 S4WJ95
S6CPV2 S6CPY7 S6CPY8
S6CQ93 S6CQ95 S6CQQ6
S6CQQ8 V5J9V9 V5JAD7
W5REC1
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-007ENST000004339361219134 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q4VC57 Q4VC58 Q5BLN9
Q9BCU1
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-006ENST00000457445484144 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-DQB1-008ENST000004807491423136 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-B9WPP0 L0BVR1 L0BW09
M4N6J2 M4NBX3 O78045
O78198 Q1HCM4 Q1M313
Q29965 Q4VC57 Q4VC58
Q5BLN9 Q9BCU1 R4KXM9
R4KZS6 R4QQZ0 S4WJ95
V5J9V9 V5JAD7 W5REC1
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-DQB1-009ENST00000476430428No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-DQB1-005ENST000004727084732No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 3 Coding exons: 0 Transcript length: 4,732 bps

Transcript Support Level

NA

Ensembl version

ENST00000472708.3

Type

Known retained intron

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays