Description

major histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:HGNC:4933]

Synonyms

D6S204, HLA-JY3, PSORS1

Gene

This transcript is a product of gene ENSG00000228299

This gene has 12 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
HLA-C-001ENST000004202061578366 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A6Q0R5 C6JSY4 C8CHA3
C8CHB0 C9WER3 C9WES6
D5M8C2 D6C6F5 D6MJI6
D6MJJ6 D6MKX7 D6MLA4
D7NP32 D7NQZ3 D7NR05
D7NSS2 D9UAZ6 D9UC06
E0WBP6 E0X604 E0X9K6
E2GJH2 E5DCQ3 E7DVC2
E7DZZ9 F1AQQ5 F1CCJ0
F2VNS4 F2VNS9 F2VNU0
F2VYL3 F2X619 F2X648
F4YU99 F6IQH7 F6IQI8
F6IQJ5 F6KRW1 F6KRX0
F6KRZ3 F6KS01 F8R1B0
F8RHI3 F8SKX9 G0WVC9
G0X8T2 G1EMS9 G1ENQ7
G1ENS6 G1EQK9 G1EQL4
G1EQL5 G1EQL9 G1EQM1
G3D6F2 G3D6G9 G3D6H8
G3DR65 G3DR68 G4V594
G9HW90 H6V085 H6V086
H9BYT8 H9BYV0 I6M563
I6MHJ5 I6NWP7 J7K028
J7K1B8 J7K1D5 J7K3H7
J7K472 J7K476 J7K6P8
J9PWM7 K4RH57 K7P5L9
K7P606 K9L7Q9 L0BXJ6
M9P8J9 M9P932 M9P947
M9P9H6 M9PA04 M9PAD5
O19654 O19657 O19757
P30501 P30508 Q29865
Q29963 Q5QT33 Q7JFH7
Q7YNY6 Q7YP25 Q9MYH6
Q9MYH8 Q9MYI1 Q9MYI2
S4T702 S5DI24 S5DLE2
S5DLE7 S5DN61 U5YBS9
U5YC44 U5YC48 U5YC52
U5YC62 U5YCA7 U5YCF0
U5YCG2 U5YD04 U5YD71
U5YF29 U5YF33 U5YF48
U5YF50 U5YF53 V5L616
V5L6B5 V5NRD2 V5NRD7
V5NVV3 V5NXS8 V9N330
V9SBU0
NM_002117
NP_002108
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-003ENST000004581921552372 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C6JSY4 C8CHA3 C8CHB0
C9WER3 C9WES6 D5M8C2
D6C6F5 D6MJI6 D6MJJ6
D6MKX7 D6MLA4 D7NP32
D7NQZ3 D7NR05 D7NSS2
D9UAZ6 D9UC06 E0WBP6
E0X604 E0X9K6 E2GJH2
E5DCQ3 E7DVC2 E7DZZ9
F1AQQ5 F1CCJ0 F2VNS4
F2VNS9 F2VNU0 F2VYL3
F2X619 F2X648 F4YU99
F6KRW1 F6KRX0 F6KRZ3
F6KS01 F8R1B0 F8RHI3
F8SKX9 G0WVC9 G0X8T2
G1EMS9 G1ENQ7 G1ENS6
G1EQK9 G1EQL4 G1EQL5
G1EQL9 G1EQM1 G3D6F2
G3D6G9 G3D6H8 G3DR65
G3DR68 G4V594 G9HW90
H6V085 H6V086 H9BYT8
H9BYV0 I6M563 I6MHJ5
I6NWP7 J7K028 J7K1B8
J7K1D5 J7K3H7 J7K472
J7K476 J7K6P8 J9PWM7
K4RH57 K7P5L9 K7P606
K9L7Q9 L0BXJ6 M9P8J9
M9P932 M9P947 M9P9H6
M9PA04 M9PAD5 O19654
O19657 O19757 Q7JFH7
Q7YNY6 Q7YP25 Q9MYH6
Q9MYH8 Q9MYI1 Q9MYI2
S4T702 S5DI24 S5DLE2
S5DLE7 S5DN61 U5YBS9
U5YC44 U5YC48 U5YC52
U5YC62 U5YCA7 U5YCF0
U5YCG2 U5YD04 U5YD71
U5YF29 U5YF33 U5YF48
U5YF50 U5YF53 V5L616
V5L6B5 V5NVV3 V5NXS8
V9N330 V9SBU0
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-004ENST000004229211530397 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C6JSY4 C8CHA3 C8CHB0
C9WER3 C9WES6 D5M8C2
D6C6F5 D6MJI6 D6MJJ6
D6MKX7 D6MLA4 D7NP32
D7NQZ3 D7NR05 D7NSS2
D9UAZ6 D9UC06 E0WBP6
E0X604 E0X9K6 E2GJH2
E5DCQ3 E7DVC2 E7DZZ9
F1AQQ5 F1CCJ0 F2VNS4
F2VNS9 F2VNU0 F2VYL3
F2X619 F2X648 F4YU99
F6KRW1 F6KRX0 F6KRZ3
F6KS01 F8R1B0 F8RHI3
F8SKX9 G0WVC9 G0X8T2
G1EMS9 G1ENQ7 G1ENS6
G1EQK9 G1EQL4 G1EQL5
G1EQL9 G1EQM1 G3D6F2
G3D6G9 G3D6H8 G3DR65
G3DR68 G4V594 G9HW90
H6V085 H6V086 H9BYT8
H9BYV0 I6M563 I6MHJ5
I6NWP7 J7K028 J7K1B8
J7K1D5 J7K3H7 J7K472
J7K476 J7K6P8 J9PWM7
K4RH57 K7P5L9 K7P606
K9L7Q9 L0BXJ6 M9P8J9
M9P932 M9P947 M9P9H6
M9PA04 M9PAD5 O19654
O19657 O19757 Q7JFH7
Q7YNY6 Q7YP25 Q9MYH6
Q9MYH8 Q9MYI1 Q9MYI2
S4T702 S5DI24 S5DLE2
S5DLE7 S5DN61 U5YBS9
U5YC44 U5YC48 U5YC52
U5YC62 U5YCA7 U5YCF0
U5YCG2 U5YD04 U5YD71
U5YF29 U5YF33 U5YF48
U5YF50 U5YF53 V5L616
V5L6B5 V5NVV3 V5NXS8
V9N330 V9SBU0
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-002ENST000004564871450368 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C6JSY4 C8CHA3 C8CHB0
C9WER3 C9WES6 D5M8C2
D6C6F5 D6MJI6 D6MJJ6
D6MKX7 D6MLA4 D7NP32
D7NQZ3 D7NR05 D7NSS2
D9UAZ6 D9UC06 E0WBP6
E0X604 E0X9K6 E2GJH2
E5DCQ3 E7DVC2 E7DZZ9
F1AQQ5 F1CCJ0 F2VNS4
F2VNS9 F2VNU0 F2VYL3
F2X619 F2X648 F4YU99
F6KRW1 F6KRX0 F6KRZ3
F6KS01 F8R1B0 F8RHI3
F8SKX9 G0WVC9 G0X8T2
G1EMS9 G1ENQ7 G1ENS6
G1EQK9 G1EQL4 G1EQL5
G1EQL9 G1EQM1 G3D6F2
G3D6G9 G3D6H8 G3DR65
G3DR68 G4V594 G9HW90
H6V085 H6V086 H9BYT8
H9BYV0 I6M563 I6MHJ5
I6NWP7 J7K028 J7K1B8
J7K1D5 J7K3H7 J7K472
J7K476 J7K6P8 J9PWM7
K4RH57 K7P5L9 K7P606
K9L7Q9 L0BXJ6 M9P8J9
M9P932 M9P947 M9P9H6
M9PA04 M9PAD5 O19654
O19657 O19757 Q7JFH7
Q7YNY6 Q7YP25 Q9MYH6
Q9MYH8 Q9MYI1 Q9MYI2
S4T702 S5DI24 S5DLE2
S5DLE7 S5DN61 U5YBS9
U5YC44 U5YC48 U5YC52
U5YC62 U5YCA7 U5YCF0
U5YCG2 U5YD04 U5YD71
U5YF29 U5YF33 U5YF48
U5YF50 U5YF53 V5L616
V5L6B5 V5NVV3 V5NXS8
V9N330 V9SBU0
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-007ENST00000454033782261 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C6JSY4 C8CHA3 C8CHB0
C9WER3 C9WES6 D5M8C2
D6C6F5 D6MJI6 D6MJJ6
D6MKX7 D6MLA4 D7NP32
D7NQZ3 D7NR05 D7NSS2
E0WBP6 E0X604 E0X9K6
E2GJH2 E5DCQ3 E7DVC2
E7DZZ9 F1AQQ5 F1CCJ0
F2VNS4 F2VNS9 F2VNU0
F2VYL3 F2X619 F2X648
F4YU99 F6KRW1 F6KRX0
F6KRZ3 F6KS01 F8R1B0
F8RHI3 F8SKX9 G0WVC9
G0X8T2 G1EMS9 G1ENQ7
G1ENS6 G1EQK9 G1EQL4
G1EQL5 G1EQL9 G1EQM1
G3D6F2 G3D6G9 G3D6H8
G3DR65 G3DR68 G9HW90
H6V085 H6V086 H9BYT8
H9BYV0 I6M563 I6MHJ5
I6NWP7 J7K028 J7K1B8
J7K1D5 J7K3H7 J7K472
J7K476 J7K6P8 J9PWM7
K4RH57 K7P5L9 K7P606
K9L7Q9 L0BXJ6 M9P8J9
M9P932 M9P947 M9P9H6
M9PA04 M9PAD5 O19757
S4T702 U5YBS9 U5YC44
U5YC48 U5YC52 U5YC62
U5YCA7 U5YCF0 U5YCG2
U5YD04 U5YD71 U5YF29
U5YF33 U5YF48 U5YF50
U5YF53 V5L616 V5L6B5
V5NVV3 V5NXS8 V9N330
V9SBU0
-CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-006ENST000004795951536131 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H9BYT8 H9BYV0 O19654
Q7JFH7 U5YCA7 U5YD04
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-009ENST00000495725966No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-005ENST000004956351874No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-010ENST000004747241276No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-008ENST000004948231073No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-012ENST00000482179858No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-011ENST00000468663752No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 7 Coding exons: 7 Transcript length: 1,530 bps Translation length: 397 residues

Transcript Support Level

NA

Ensembl version

ENST00000422921.4

Type

Known protein coding

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays