Description

major histocompatibility complex, class II, DQ beta 1 [Source:HGNC Symbol;Acc:HGNC:4944]

Synonyms

CELIAC1, HLA-DQB, IDDM1

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
HLA-DQB1-002ENST000004218881787269 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E2J6N1 E9ABV2 E9AI16
F1CGQ1 F8LFR9 I4EPE0
I7EL85 L0BX28 L0BXL3
L0BXS2 Q29916 Q5BLP0
Q5BLP1 Q67AL6 Q67AL7
Q6IVL2 R4KZS1 R4L8Z8
S6CQQ4 T1R359 T1R369
U5IQI9 U5ISY3 V5JA09
V9N333
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-003ENST000004248061732261 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E2J6N1 E9ABV2 E9AI16
F1CGQ1 F8LFR9 I4EPE0
I7EL85 L0BX28 L0BXL3
L0BXS2 P01920 Q29916
Q30074 Q5BLP0 Q5BLP1
Q67AL6 Q67AL7 Q6IVL2
R4KZS1 R4L8Z8 S6CQQ4
T1R359 T1R369 U5IQI9
U5ISY3 V5JA09 V9N333
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-001ENST000004199141640261 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E2J6N1 E9ABV2 E9AI16
F1CGQ1 F8LFR9 I4EPE0
I7EL85 L0BX28 L0BXL3
L0BXS2 P01920 Q29916
Q30074 Q5BLP0 Q5BLP1
Q67AL6 Q67AL7 Q6IVL2
R4KZS1 R4L8Z8 S6CQQ4
T1R359 T1R369 U5IQI9
U5ISY3 V5JA09 V9N333
NM_001243962
NP_001230891
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-004ENST000004159261483224 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E2J6N1 E9ABV2 E9AI16
F1CGQ1 F8LFR9 I4EPE0
I7EL85 L0BX28 L0BXL3
L0BXS2 Q29916 Q5BLP0
Q5BLP1 Q6IVL2 R4KZS1
R4L8Z8 S6CQQ4 T1R359
T1R369 U5IQI9 U5ISY3
V5JA09 V9N333
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-007ENST000004282191217134 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q29916 Q5BLP0 Q5BLP1
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-006ENST00000456954481144 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q29916 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-DQB1-008ENST000004733661421136 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-B4DJG1 E2J6N1 E9ABV2
E9AI16 F1CGQ1 I7EL85
L0BX28 L0BXL3 L0BXS2
Q5BLP0 Q5BLP1 Q6IVL2
R4KZS1 R4L8Z8 T1R359
T1R369 U5IQI9 U5ISY3
V5JA09 V9N333
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-DQB1-009ENST00000493020429No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-DQB1-005ENST000004751824986No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 3 Coding exons: 3 Transcript length: 481 bps Translation length: 144 residues

Transcript Support Level

NA

Ensembl version

ENST00000456954.1

Type

Known protein coding

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays