Description

major histocompatibility complex, class II, DQ beta 1 [Source:HGNC Symbol;Acc:HGNC:4944]

Synonyms

CELIAC1, HLA-DQB, IDDM1

Gene

This transcript is a product of gene ENSG00000225824

This gene has 9 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
HLA-DQB1-002ENST000004218881787 bp269 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E2J6N1 E9ABV2 E9AI16
F1CGQ1 F8LFR9 I4EPE0
I7EL85 L0BX28 L0BXL3
L0BXS2 Q29916 Q5BLP0
Q5BLP1 Q67AL6 Q67AL7
Q6IVL2 R4KZS1 R4L8Z8
S6CQQ4 T1R359 T1R369
U5IQI9 U5ISY3 V5JA09
V9N333
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-003ENST000004248061732 bp261 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E2J6N1 E9ABV2 E9AI16
F1CGQ1 F8LFR9 I4EPE0
I7EL85 L0BX28 L0BXL3
L0BXS2 P01920 Q29916
Q30074 Q5BLP0 Q5BLP1
Q67AL6 Q67AL7 Q6IVL2
R4KZS1 R4L8Z8 S6CQQ4
T1R359 T1R369 U5IQI9
U5ISY3 V5JA09 V9N333
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-001ENST000004199141640 bp261 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E2J6N1 E9ABV2 E9AI16
F1CGQ1 F8LFR9 I4EPE0
I7EL85 L0BX28 L0BXL3
L0BXS2 P01920 Q29916
Q30074 Q5BLP0 Q5BLP1
Q67AL6 Q67AL7 Q6IVL2
R4KZS1 R4L8Z8 S6CQQ4
T1R359 T1R369 U5IQI9
U5ISY3 V5JA09 V9N333
NM_001243962
NP_001230891
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-004ENST000004159261483 bp224 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E2J6N1 E9ABV2 E9AI16
F1CGQ1 F8LFR9 I4EPE0
I7EL85 L0BX28 L0BXL3
L0BXS2 Q29916 Q5BLP0
Q5BLP1 Q6IVL2 R4KZS1
R4L8Z8 S6CQQ4 T1R359
T1R369 U5IQI9 U5ISY3
V5JA09 V9N333
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-007ENST000004282191217 bp134 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q29916 Q5BLP0 Q5BLP1
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQB1-006ENST00000456954481 bp144 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q29916 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
HLA-DQB1-008ENST000004733661421 bp136 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-B4DJG1 E2J6N1 E9ABV2
E9AI16 F1CGQ1 I7EL85
L0BX28 L0BXL3 L0BXS2
Q5BLP0 Q5BLP1 Q6IVL2
R4KZS1 R4L8Z8 T1R359
T1R369 U5IQI9 U5ISY3
V5JA09 V9N333
-
HLA-DQB1-009ENST00000493020429 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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HLA-DQB1-005ENST000004751824986 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 5 Coding exons: 5 Transcript length: 1,640 bps Translation length: 261 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P01920

Ensembl version

ENST00000419914.3

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays