Description

major histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:HGNC:4933]

Synonyms

D6S204, HLA-JY3, PSORS1

Gene

This transcript is a product of gene ENSG00000225691

This gene has 13 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
HLA-C-001ENST000004579031579366 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2BCX3 A2BCY6 A6YS06
C0KJX4 C3VMX5 C6K4R0
C7FDV8 C9WEU7 D1H0T7
D2DKI7 D2DKJ0 D3G9G8
D3G9H4 D3G9I1 D3G9I6
D3JWS1 D3U4D6 D3U4E1
D3U747 D3U757 D5FZN2
D5FZN3 D5FZN4 D5FZN5
D6CJC0 D7NP36 D7NPB7
D7RJ41 E0WBW1 E0X9K7
E1U663 E1U665 E1U669
E1U670 E3SWK7 E5DCQ8
E7BYD3 F2VNP6 F2VNQ4
F2VNS6 F2VYK4 F2VYK6
F2X629 F2XI54 F4YU83
F6IQC7 F6IQD1 F6IQD2
F6IQD4 F6IQD6 F6IQD7
F6IQD8 F6IQD9 F6IQE0
F6IQE2 F6IQE3 F6IQE4
F6IQE5 F6IQE8 F6IQE9
F6KRZ1 F6KRZ5 F6KRZ7
F8R1C0 F8R8L0 G0ZDV6
G0ZMK1 G0ZMK9 G0ZMM6
G1ENN5 G1ENN6 G1ENR5
G1EQ77 G1EQC1 G1EQF7
G1UK12 G3D6C2 G3DR76
G9I2M0 G9I2M8 H3K397
H6A2G0 H6UV81 H6V7R9
H9BQ91 H9BYT9 H9BYU9
H9C5I7 H9C5I8 I6M566
I6MHI9 I6NVQ2 I6SW89
I7DEM4 J7F8J9 J9PWP2
K7P503 K7P519 K7P5L4
K7P5V9 K7XHB9 L7SQ42
M9P8H9 M9P8R4 M9P8U6
M9P940 M9P9M6 M9PA46
M9PAE0 M9PAK2 N0AA40
O19552 O19653 O19654
O19656 O78065 O78066
O78092 P04222 Q1WAB0
Q2I7M5 Q53YP1 Q7JFH7
Q7YNY3 Q7YNY4 Q7YNY5
Q8MGY4 Q9MYH7 Q9MYH9
Q9MYI0 Q9TNT3 Q9TNZ7
Q9TPU7 Q9UQT1 Q9UQT2
R9QZ21 S5DL99 S5DLA8
S5DN08 S5DTF8 S5DTG6
T1R3C7 U5YEZ9 V5L7F6
V5NQT5 V5NQV7 V5NQW6
V5NRC4 V5NSU6
NM_002117
NP_002108
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-003ENST000004191351553372 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2BCX3 A2BCY6 C0KJX4
C6K4R0 C7FDV8 C9WEU7
D1H0T7 D2DKI7 D2DKJ0
D3G9G8 D3G9H4 D3G9I1
D3G9I6 D3JWS1 D3U4D6
D3U4E1 D3U747 D3U757
D5FZN2 D5FZN3 D5FZN4
D5FZN5 D7NP36 D7NPB7
D7RJ41 E0WBW1 E0X9K7
E1U663 E1U665 E1U669
E1U670 E3SWK7 E5DCQ8
E7BYD3 F2VNP6 F2VNQ4
F2VNS6 F2VYK4 F2VYK6
F2X629 F2XI54 F4YU83
F6KRZ1 F6KRZ5 F6KRZ7
F8R1C0 F8R8L0 G0ZDV6
G0ZMK1 G0ZMK9 G0ZMM6
G1ENN5 G1ENN6 G1ENR5
G1EQ77 G1EQC1 G1EQF7
G1UK12 G3D6C2 G3DR76
G9I2M0 G9I2M8 H3K397
H6A2G0 H6UV81 H6V7R9
H9BQ91 H9BYT9 H9BYU9
H9C5I7 H9C5I8 I6M566
I6MHI9 I6NVQ2 I6SW89
I7DEM4 J7F8J9 J9PWP2
K7P503 K7P519 K7P5L4
K7P5V9 K7XHB9 L7SQ42
M9P8H9 M9P8R4 M9P8U6
M9P940 M9P9M6 M9PA46
M9PAE0 M9PAK2 N0AA40
O19552 O19653 O19654
O19656 O78065 O78066
O78092 Q1WAB0 Q2I7M5
Q7JFH7 Q7YNY3 Q7YNY4
Q7YNY5 Q8MGY4 Q9MYH7
Q9MYH9 Q9MYI0 Q9TNT3
Q9TNZ7 Q9TPU7 Q9UQT1
Q9UQT2 R9QZ21 S5DL99
S5DLA8 S5DN08 S5DTF8
S5DTG6 T1R3C7 U5YEZ9
V5L7F6
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-004ENST000004331531502355 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2BCX3 A2BCY6 C0KJX4
C6K4R0 C7FDV8 C9WEU7
D1H0T7 D2DKI7 D2DKJ0
D3G9G8 D3G9H4 D3G9I1
D3G9I6 D3JWS1 D3U4D6
D3U4E1 D3U747 D3U757
D5FZN2 D5FZN3 D5FZN4
D5FZN5 D7NP36 D7NPB7
D7RJ41 E0WBW1 E0X9K7
E1U663 E1U665 E1U669
E1U670 E3SWK7 E5DCQ8
E7BYD3 F2VNP6 F2VNQ4
F2VNS6 F2VYK4 F2VYK6
F2X629 F2XI54 F4YU83
F6KRZ1 F6KRZ5 F6KRZ7
F8R1C0 F8R8L0 G0ZDV6
G0ZMK1 G0ZMK9 G0ZMM6
G1ENN5 G1ENN6 G1ENR5
G1EQ77 G1EQC1 G1EQF7
G1UK12 G3D6C2 G3DR76
G9I2M0 G9I2M8 H3K397
H6A2G0 H6UV81 H6V7R9
H9BQ91 H9BYT9 H9BYU9
H9C5I7 H9C5I8 I6M566
I6MHI9 I6NVQ2 I6SW89
I7DEM4 J7F8J9 J9PWP2
K7P503 K7P519 K7P5L4
K7P5V9 K7XHB9 L7SQ42
M9P8H9 M9P8R4 M9P8U6
M9P940 M9P9M6 M9PA46
M9PAE0 M9PAK2 N0AA40
O19552 O19653 O19654
O19656 O78065 O78066
O78092 Q1WAB0 Q2I7M5
Q7JFH7 Q7YNY3 Q7YNY4
Q7YNY5 Q8MGY4 Q9MYH7
Q9MYH9 Q9MYI0 Q9TNT3
Q9TNZ7 Q9TPU7 Q9UQT1
Q9UQT2 R9QZ21 S5DL99
S5DLA8 S5DN08 S5DTF8
S5DTG6 T1R3C7 U5YEZ9
V5L7F6
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-002ENST000004298401451368 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2BCX3 A2BCY6 C0KJX4
C6K4R0 C7FDV8 C9WEU7
D1H0T7 D2DKI7 D2DKJ0
D3G9G8 D3G9H4 D3G9I1
D3G9I6 D3JWS1 D3U4D6
D3U4E1 D3U747 D3U757
D5FZN2 D5FZN3 D5FZN4
D5FZN5 D7NP36 D7NPB7
D7RJ41 E0WBW1 E0X9K7
E1U663 E1U665 E1U669
E1U670 E3SWK7 E5DCQ8
E7BYD3 F2VNP6 F2VNQ4
F2VNS6 F2VYK4 F2VYK6
F2X629 F2XI54 F4YU83
F6KRZ1 F6KRZ5 F6KRZ7
F8R1C0 F8R8L0 G0ZDV6
G0ZMK1 G0ZMK9 G0ZMM6
G1ENN5 G1ENN6 G1ENR5
G1EQ77 G1EQC1 G1EQF7
G1UK12 G3D6C2 G3DR76
G9I2M0 G9I2M8 H3K397
H6A2G0 H6UV81 H6V7R9
H9BQ91 H9BYT9 H9BYU9
H9C5I7 H9C5I8 I6M566
I6MHI9 I6NVQ2 I6SW89
I7DEM4 J7F8J9 J9PWP2
K7P503 K7P519 K7P5L4
K7P5V9 K7XHB9 L7SQ42
M9P8H9 M9P8R4 M9P8U6
M9P940 M9P9M6 M9PA46
M9PAE0 M9PAK2 N0AA40
O19552 O19653 O19654
O19656 O78065 O78066
O78092 Q1WAB0 Q2I7M5
Q7JFH7 Q7YNY3 Q7YNY4
Q7YNY5 Q8MGY4 Q9MYH7
Q9MYH9 Q9MYI0 Q9TNT3
Q9TNZ7 Q9TPU7 Q9UQT1
Q9UQT2 R9QZ21 S5DL99
S5DLA8 S5DN08 S5DTF8
S5DTG6 T1R3C7 U5YEZ9
V5L7F6
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-007ENST00000445075782261 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2BCX3 A2BCY6 C0KJX4
C6K4R0 C7FDV8 C9WEU7
D1H0T7 D2DKI7 D2DKJ0
D3G9G8 D3G9H4 D3G9I1
D3G9I6 D3JWS1 D3U4D6
D3U4E1 D3U747 D3U757
D5FZN2 D5FZN3 D5FZN4
D5FZN5 D7NP36 D7NPB7
D7RJ41 E0WBW1 E0X9K7
E1U663 E1U665 E1U669
E1U670 E3SWK7 E5DCQ8
E7BYD3 F2VNP6 F2VNQ4
F2VNS6 F2VYK4 F2VYK6
F2X629 F4YU83 F6KRZ1
F6KRZ5 F6KRZ7 F8R1C0
F8R8L0 G0ZDV6 G0ZMK1
G0ZMK9 G0ZMM6 G1ENN5
G1ENN6 G1ENR5 G1EQ77
G1EQC1 G1EQF7 G3D6C2
G3DR76 G9I2M0 G9I2M8
H6A2G0 H6UV81 H6V7R9
H9BQ91 H9BYT9 H9BYU9
H9C5I7 H9C5I8 I6M566
I6MHI9 I6NVQ2 I6SW89
I7DEM4 J7F8J9 J9PWP2
K7P503 K7P519 K7P5L4
K7P5V9 K7XHB9 M9P8H9
M9P8R4 M9P8U6 M9P940
M9P9M6 M9PA46 M9PAE0
M9PAK2 N0AA40 O19552
O78065 O78066 O78092
Q1WAB0 Q2I7M5 Q7YNY4
Q7YNY5 Q8MGY4 Q9TNT3
Q9TPU7 Q9UQT1 Q9UQT2
R9QZ21 T1R3C7 U5YEZ9
V5L7F6
-CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-203ENST0000061914814749 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-006ENST000004919841537131 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H9BYT9 H9BYU9 O19552
O19654 O19656 O78065
Q7JFH7 Q7YNY5 Q8MGY4
Q9UQT2
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-009ENST00000479546966No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-005ENST000004815881874No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-010ENST000004909601277No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-008ENST000004679221073No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-012ENST00000482006857No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-011ENST00000475452753No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 8 Coding exons: 8 Transcript length: 1,553 bps Translation length: 372 residues

Transcript Support Level

NA

Ensembl version

ENST00000419135.4

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays