Description

vacuolar protein sorting 52 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:10518]

Synonyms

ARE1, SACM2L

About this transcript

This transcript has 19 exons, is annotated with 2 domains and features and is associated with 10 variations.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
VPS52-001ENST000004438602960723aaENSP00000404016
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8N1B4 NM_001289174
NM_001289175
NP_001276103
NP_001276104
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
VPS52-007ENST00000478392333888aaENSP00000434469
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
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VPS52-002ENST000004833512602No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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VPS52-004ENST000004876111060No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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VPS52-005ENST00000462911925No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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VPS52-011ENST00000494451878No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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VPS52-010ENST00000467000743No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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VPS52-006ENST00000485137505No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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VPS52-003ENST00000463636786No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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VPS52-009ENST00000488248547No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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VPS52-008ENST00000484059453No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 19 Coding exons: 1 Transcript length: 3,338 bps Translation length: 88 residues

Ensembl version

ENST00000478392.4

Type

Known nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays