Description

isoprenoid synthase domain containing [Source:HGNC Symbol;Acc:HGNC:37276]

Synonyms

hCG_1745121, IspD, Nip

Location
About this transcript

This transcript has 10 exons, is annotated with 2 domains and features, is associated with 162 variations and maps to 10 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
ISPD-001ENST000004070105524451aaENSP00000385478
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A4D126 NM_001101426
NP_001094896
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
ISPD-003ENST000003993101709401aaENSP00000382249
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A4D126 NM_001101417
NP_001094887
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ISPD-002ENST00000479493929No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 10 Coding exons: 10 Transcript length: 5,524 bps Translation length: 451 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A4D126

Transcript Support Level (TSL)

TSL:5

Ensembl version

ENST00000407010.5

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
Annotation Attributes

3' standard supported extension [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays