Description

T cell receptor alpha joining 40 [Source:HGNC Symbol;Acc:HGNC:12071]

Location
Gene

This transcript is a product of gene ENSG00000211849

This gene has 1 transcript (splice variant) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtFlags
TRAJ40-001ENST000003904976120 aa
 
TR J geneGene that rearranges at the DNA level and codes the joining (J) region of the variable domain of T cell receptors.
-A0N4X2 CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
Statistics

Exons: 1 Coding exons: 1 Transcript length: 61 bps Translation length: 20 residues

Transcript Support Level

NA

Ensembl version

ENST00000390497.1

Type

Known TR J gene

Prediction Method

Immunoglobulin (Ig) and T-cell receptor (TcR) annotation imported from the manually curated IG gene set from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays