Description

major histocompatibility complex, class I, C [Source:HGNC Symbol;Acc:HGNC:4933]

Synonyms

D6S204, HLA-JY3, PSORS1

NameTranscript IDbpProteinBiotypeCCDSUniProtFlags
HLA-C-001ENST000004003411599366 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B6V6K4 C0KJX3 C0KJX9
C0KJZ1 C0KJZ3 C6H0N1
C7C5U0 C7EY82 C7FDU0
C9E1I0 C9WES7 D3JTB6
D3U465 D5M8A5 D6C504
D6C505 D6C507 D6C508
D6C510 D6C512 D6C513
D6C516 D6C518 D6MJI2
D6MLB9 D6MLE0 D6MLG8
D7NP28 D7NP56 E0WBQ7
E0WN25 E0X607 E0YTM5
E0YTM7 E1XUP8 E2D5R7
E2D5S4 E2D5S5 E2D5S7
E3SGC6 E3SWL0 E3SWN1
E5DCQ9 E5DCR1 E7BYC4
F1CCK6 F2VNR1 F2VNR2
F2VNR6 F2X617 F2X627
F4YUA0 F6KRX1 F6KRX8
F8R1C9 G0X8T7 G0ZML7
G1EMV3 G1ENM0 G1ENS2
G1ENX9 G1EQ32 G1EQ47
G1EQB7 G1EQI4 G1EQJ0
G1EQK2 G3D6C7 G3D6C8
G3D6H0 G3DR77 G9I2M5
H2BDR0 H6A2F2 H9C5I4
I6NN29 I6NN83 I6NVQ7
J7F7B5 J7K3J1 J7K7F8
J9PWM3 K7P4Z9 K7P5H0
K7P5I0 K7P5L7 K7P5W2
K9L8C6 L0BW02 M1GM98
M9P8K2 M9P937 M9P9D7
M9P9G5 M9P9K0 M9P9K5
M9P9N0 M9P9N3 M9P9W8
M9PAC0 M9PAF1 M9PAG7
N0A8Z3 O19654 P30504
P30505 Q07000 Q5RIP0
Q6A0F4 Q7JFH7 Q7YNY6
Q7YP25 Q8HWT2 Q8SNB0
Q95604 Q9MYH6 Q9MYH8
Q9MYI1 Q9MYI2 Q9TNN7
R4QIP6 R9QZB0 U6EFV2
V5JA01
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-003ENST000003834871552372 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B6V6K4 C0KJX3 C0KJX9
C0KJZ1 C0KJZ3 C6H0N1
C7C5U0 C7EY82 C7FDU0
C9E1I0 C9WES7 D3JTB6
D3U465 D5M8A5 D6C504
D6C505 D6C507 D6C508
D6C510 D6C512 D6C513
D6C516 D6C518 D6MJI2
D6MLB9 D6MLE0 D6MLG8
D7NP28 D7NP56 E0WBQ7
E0WN25 E0X607 E0YTM5
E0YTM7 E1XUP8 E2D5R7
E2D5S4 E2D5S5 E2D5S7
E3SGC6 E3SWL0 E3SWN1
E5DCQ9 E5DCR1 E7BYC4
F1CCK6 F2VNR1 F2VNR2
F2VNR6 F2X617 F2X627
F4YUA0 F6KRX1 F6KRX8
F8R1C9 G0X8T7 G0ZML7
G1EMV3 G1ENM0 G1ENS2
G1ENX9 G1EQ32 G1EQ47
G1EQB7 G1EQI4 G1EQJ0
G1EQK2 G3D6C7 G3D6C8
G3D6H0 G3DR77 G9I2M5
H2BDR0 H6A2F2 H9C5I4
I6NN29 I6NN83 I6NVQ7
J7F7B5 J7K3J1 J7K7F8
J9PWM3 K7P4Z9 K7P5H0
K7P5I0 K7P5L7 K7P5W2
K9L8C6 L0BW02 M1GM98
M9P8K2 M9P937 M9P9D7
M9P9G5 M9P9K0 M9P9K5
M9P9N0 M9P9N3 M9P9W8
M9PAC0 M9PAF1 M9PAG7
N0A8Z3 O19654 Q6A0F4
Q7JFH7 Q7YNY6 Q7YP25
Q8HWT2 Q8SNB0 Q9MYH6
Q9MYH8 Q9MYI1 Q9MYI2
R4QIP6 R9QZB0 U6EFV2
V5JA01
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-004ENST000003834831530397 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A2BF26 B6V6K4 C0KJX3
C0KJX9 C0KJZ1 C0KJZ3
C6H0N1 C7C5U0 C7EY82
C7FDU0 C9E1I0 C9WES7
D3JTB6 D3U465 D5M8A5
D6C504 D6C505 D6C507
D6C508 D6C510 D6C512
D6C513 D6C516 D6C518
D6MJI2 D6MLB9 D6MLE0
D6MLG8 D7NP28 D7NP56
E0WBQ7 E0WN25 E0X607
E0YTM5 E0YTM7 E1XUP8
E2D5R7 E2D5S4 E2D5S5
E2D5S7 E3SGC6 E3SWL0
E3SWN1 E5DCQ9 E5DCR1
E7BYC4 F1CCK6 F2VNR1
F2VNR2 F2VNR6 F2X617
F2X627 F4YUA0 F6KRX1
F6KRX8 F8R1C9 G0X8T7
G0ZML7 G1EMV3 G1ENM0
G1ENS2 G1ENX9 G1EQ32
G1EQ47 G1EQB7 G1EQI4
G1EQJ0 G1EQK2 G3D6C7
G3D6C8 G3D6H0 G3DR77
G9I2M5 H2BDR0 H6A2F2
H9C5I4 I6NN29 I6NN83
I6NVQ7 J7F7B5 J7K3J1
J7K7F8 J9PWM3 K7P4Z9
K7P5H0 K7P5I0 K7P5L7
K7P5W2 K9L8C6 L0BW02
M1GM98 M9P8K2 M9P937
M9P9D7 M9P9G5 M9P9K0
M9P9K5 M9P9N0 M9P9N3
M9P9W8 M9PAC0 M9PAF1
M9PAG7 N0A8Z3 O19654
Q6A0F4 Q7JFH7 Q7YNY6
Q7YP25 Q8HWT2 Q8SNB0
Q9MYH6 Q9MYH8 Q9MYI1
Q9MYI2 R4QIP6 R9QZB0
U6EFV2 V5JA01
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-002ENST000004586681447368 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B6V6K4 C0KJX3 C0KJX9
C0KJZ1 C0KJZ3 C6H0N1
C7C5U0 C7EY82 C7FDU0
C9E1I0 C9WES7 D3JTB6
D3U465 D5M8A5 D6C504
D6C505 D6C507 D6C508
D6C510 D6C512 D6C513
D6C516 D6C518 D6MJI2
D6MLB9 D6MLE0 D6MLG8
D7NP28 D7NP56 E0WBQ7
E0WN25 E0X607 E0YTM5
E0YTM7 E1XUP8 E2D5R7
E2D5S4 E2D5S5 E2D5S7
E3SGC6 E3SWL0 E3SWN1
E5DCQ9 E5DCR1 E7BYC4
F1CCK6 F2VNR1 F2VNR2
F2VNR6 F2X617 F2X627
F4YUA0 F6KRX1 F6KRX8
F8R1C9 G0X8T7 G0ZML7
G1EMV3 G1ENM0 G1ENS2
G1ENX9 G1EQ32 G1EQ47
G1EQB7 G1EQI4 G1EQJ0
G1EQK2 G3D6C7 G3D6C8
G3D6H0 G3DR77 G9I2M5
H2BDR0 H6A2F2 H9C5I4
I6NN29 I6NN83 I6NVQ7
J7F7B5 J7K3J1 J7K7F8
J9PWM3 K7P4Z9 K7P5H0
K7P5I0 K7P5L7 K7P5W2
K9L8C6 L0BW02 M1GM98
M9P8K2 M9P937 M9P9D7
M9P9G5 M9P9K0 M9P9K5
M9P9N0 M9P9N3 M9P9W8
M9PAC0 M9PAF1 M9PAG7
N0A8Z3 O19654 Q6A0F4
Q7JFH7 Q7YNY6 Q7YP25
Q8HWT2 Q8SNB0 Q9MYH6
Q9MYH8 Q9MYI1 Q9MYI2
R4QIP6 R9QZB0 U6EFV2
V5JA01
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-C-007ENST00000449884782261 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B6V6K4 C0KJX3 C0KJX9
C0KJZ1 C0KJZ3 C7FDU0
C9E1I0 C9WES7 D3JTB6
D3U465 D5M8A5 D6C504
D6C505 D6C507 D6C508
D6C510 D6C512 D6C513
D6C516 D6C518 D6MJI2
D6MLB9 D6MLE0 D6MLG8
D7NP28 D7NP56 E0WBQ7
E0X607 E0YTM5 E0YTM7
E2D5R7 E2D5S4 E2D5S5
E2D5S7 E3SGC6 E3SWL0
E3SWN1 E5DCQ9 E5DCR1
E7BYC4 F1CCK6 F2VNR1
F2VNR2 F2VNR6 F2X617
F2X627 F4YUA0 F6KRX1
F6KRX8 F8R1C9 G0X8T7
G0ZML7 G1EMV3 G1ENM0
G1ENS2 G1ENX9 G1EQ32
G1EQ47 G1EQB7 G1EQI4
G1EQJ0 G1EQK2 G3D6C7
G3D6C8 G3D6H0 G3DR77
G9I2M5 H2BDR0 H6A2F2
H9C5I4 I6NN29 I6NN83
I6NVQ7 J7F7B5 J7K3J1
J7K7F8 J9PWM3 K7P4Z9
K7P5H0 K7P5I0 K7P5L7
K7P5W2 K9L8C6 L0BW02
M1GM98 M9P8K2 M9P937
M9P9D7 M9P9G5 M9P9K0
M9P9K5 M9P9N0 M9P9N3
M9P9W8 M9PAC0 M9PAF1
M9PAG7 N0A8Z3 Q6A0F4
Q8HWT2 Q8SNB0 R4QIP6
R9QZB0 V5JA01
CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-006ENST000004853211536131 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-O19654 Q7JFH7 Q8SNB0
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-009ENST00000461937966224 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-B6V6K4 C0KJX3 C0KJX9
C0KJZ1 C0KJZ3 C7FDU0
C9E1I0 C9WES7 D3JTB6
D3U465 D5M8A5 D6C504
D6C505 D6C507 D6C508
D6C510 D6C512 D6C513
D6C516 D6C518 D6MJI2
D6MLB9 D6MLE0 D6MLG8
D7NP28 D7NP56 E0WBQ7
E0X607 E0YTM5 E0YTM7
E2D5R7 E2D5S4 E2D5S5
E2D5S7 E3SGC6 E3SWL0
E3SWN1 E5DCQ9 E5DCR1
E7BYC4 F1CCK6 F2VNR1
F2VNR2 F2VNR6 F2X617
F2X627 F4YUA0 F6KRX1
F6KRX8 F8R1C9 G0X8T7
G0ZML7 G1EMV3 G1ENM0
G1ENS2 G1ENX9 G1EQ32
G1EQ47 G1EQB7 G1EQI4
G1EQJ0 G1EQK2 G3D6C7
G3D6C8 G3D6H0 G3DR77
G9I2M5 H2BDR0 H6A2F2
H9C5I4 I6NN29 I6NN83
I6NVQ7 J7F7B5 J7K3J1
J7K7F8 J9PWM3 K7P4Z9
K7P5H0 K7P5I0 K7P5L7
K7P5W2 K9L8C6 L0BW02
M1GM98 M9P8K2 M9P937
M9P9D7 M9P9G5 M9P9K0
M9P9K5 M9P9N0 M9P9N3
M9P9W8 M9PAC0 M9PAF1
M9PAG7 N0A8Z3 O19654
Q6A0F4 Q7JFH7 Q8HWT2
Q8SNB0 R4QIP6 R9QZB0
V5JA01
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-005ENST000004614701873No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-010ENST000004867291276No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-008ENST000004701761073No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-012ENST00000464623858No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-C-011ENST00000488240752No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
--TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 5 Coding exons: 4 Transcript length: 966 bps Translation length: 224 residues

Transcript Support Level

NA

Ensembl version

ENST00000461937.3

Type

Known nonsense mediated decay

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays