Description

major histocompatibility complex, class II, DQ alpha 1 [Source:HGNC Symbol;Acc:HGNC:4942]

Synonyms

CELIAC1, HLA-DQA

Gene

This transcript is a product of gene ENSG00000206305

This gene has 4 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
HLA-DQA1-001ENST000003832511522254 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-O19522 O19705 P01909
Q5Y7D2 Q67AA2 Q67AA3
Q67AA4 Q67AA8 Q67AB0
Q67AB1 Q67AB2 Q67AB3
Q67AC8 Q67AC9 Q67AD0
Q67AD1 Q67AD2 Q67AD3
Q67AD4 Q67AD7 Q67AD8
Q67AD9 Q67AE0 Q67AE1
Q67AE2 Q9UEF5
NM_002122
NP_002113
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQA1-005ENST000003996781237254 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-O19522 O19705 P01909
Q5Y7D2 Q67AA2 Q67AA3
Q67AA4 Q67AA8 Q67AB0
Q67AB1 Q67AB2 Q67AB3
Q67AC8 Q67AC9 Q67AD0
Q67AD1 Q67AD2 Q67AD3
Q67AD4 Q67AD7 Q67AD8
Q67AD9 Q67AE0 Q67AE1
Q67AE2 Q9UEF5
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQA1-004ENST000003996751103254 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-O19522 O19705 P01909
Q5Y7D2 Q67AA2 Q67AA3
Q67AA4 Q67AA8 Q67AB0
Q67AB1 Q67AB2 Q67AB3
Q67AC8 Q67AC9 Q67AD0
Q67AD1 Q67AD2 Q67AD3
Q67AD4 Q67AD7 Q67AD8
Q67AD9 Q67AE0 Q67AE1
Q67AE2 Q9UEF5
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HLA-DQA1-201ENST000005480141079254 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-O19522 O19705 P01909
Q5Y7D2 Q67AA2 Q67AA3
Q67AA4 Q67AA8 Q67AB0
Q67AB1 Q67AB2 Q67AB3
Q67AC8 Q67AC9 Q67AD0
Q67AD1 Q67AD2 Q67AD3
Q67AD4 Q67AD7 Q67AD8
Q67AD9 Q67AE0 Q67AE1
Q67AE2 Q9UEF5
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 5 Coding exons: 4 Transcript length: 1,522 bps Translation length: 254 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P01909

Transcript Support Level

NA

Ensembl version

ENST00000383251.4

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays