Description

ZFP57 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:18791]

Synonyms

bA145L22, bA145L22.2, C6orf40, ZNF698

Location
About this transcript

This transcript has 6 exons, is annotated with 25 domains and features, is associated with 195 variations and maps to 34 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
ZFP57-002ENST000004887571870536aaENSP00000418259
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS43436Q9NU63 NM_001109809
NP_001103279
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

ZFP57-001ENST000003768831980516aaENSP00000366080
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9NU63 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

ZFP57-201ENST000003768811359452aaENSP00000366078
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9NU63 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 6 Coding exons: 5 Transcript length: 1,980 bps Translation length: 516 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NU63

Transcript Support Level (TSL)

TSL:5

Ensembl version

ENST00000376883.1

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays