Human (GRCh38.p14)
Description

protein tyrosine phosphatase non-receptor type 20 [Source:HGNC Symbol;Acc:HGNC:23423]

Gene Synonyms

BA142I17.1, BA42B19.1, CT126, DKFZP566K0524, PTPN20A, PTPN20B

Location
About this transcript

This transcript has 9 exons, is annotated with 17 domains and features, is associated with 30595 variant alleles and maps to 607 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000374339.5PTPN20-2023041420aaENSP00000363459.3
 
Protein coding
CCDS73110Q4JDL3-1 NM_001042357.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P2TSL:1
ENST00000374218.6PTPN20-2012872339aaENSP00000363335.2
 
Protein coding
CCDS73114Q4JDL3-4 -GENCODE basicAPPRIS ALT2TSL:5
ENST00000395721.6PTPN20-2052779339aaENSP00000379071.2
 
Protein coding
CCDS73114Q4JDL3-4 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000374346.7PTPN20-2042481226aaENSP00000363466.3
 
Protein coding
CCDS73111Q4JDL3-7 -GENCODE basicTSL:1
ENST00000395725.7PTPN20-2072226145aaENSP00000379075.3
 
Protein coding
CCDS73115Q4JDL3-14 -GENCODE basicTSL:5
ENST00000395722.7PTPN20-206199564aaENSP00000379072.4
 
Protein coding
CCDS73116Q4JDK3 -GENCODE basicTSL:1
ENST00000374342.6PTPN20-203192964aaENSP00000363462.3
 
Protein coding
CCDS73116Q4JDK3 -GENCODE basicTSL:1
ENST00000506080.5PTPN20-2161401339aaENSP00000421921.2
 
Protein coding
CCDS73114Q4JDL3-4 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000511769.5PTPN20-2251339411aaENSP00000424283.1
 
Protein coding
CCDS73105Q4JDL3-2 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000505814.5PTPN20-2151244339aaENSP00000426355.1
 
Protein coding
CCDS73114Q4JDL3-4 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000509599.5PTPN20-221945226aaENSP00000425012.1
 
Protein coding
CCDS73111Q4JDL3-7 -GENCODE basicTSL:1
ENST00000513156.5PTPN20-226913269aaENSP00000425912.1
 
Protein coding
CCDS73107Q4JDL3-11 -GENCODE basicTSL:1
ENST00000502705.5PTPN20-213854206aaENSP00000420995.1
 
Protein coding
CCDS81454Q4JDL3-10 -GENCODE basicTSL:1
ENST00000513266.5PTPN20-228818197aaENSP00000422839.1
 
Protein coding
CCDS81456Q4JDL3-5 -GENCODE basicTSL:1
ENST00000395727.6PTPN20-208790228aaENSP00000379077.2
 
Protein coding
CCDS73109Q4JDL3-6 -GENCODE basicTSL:1
ENST00000509774.5PTPN20-222788217aaENSP00000425362.1
 
Protein coding
CCDS73106Q4JDL3-8 -GENCODE basicTSL:1
ENST00000508602.5PTPN20-219742145aaENSP00000424491.2
 
Protein coding
CCDS73115Q4JDL3-14 -GENCODE basicTSL:1
ENST00000509900.5PTPN20-223693145aaENSP00000423819.1
 
Protein coding
CCDS73115Q4JDL3-14 -GENCODE basicTSL:1
ENST00000513756.5PTPN20-22964064aaENSP00000479990.1
 
Protein coding
CCDS73116Q4JDK3 -GENCODE basicTSL:1
ENST00000502254.5PTPN20-212599145aaENSP00000421404.1
 
Protein coding
CCDS86087Q4JDL3-13 -GENCODE basicTSL:1
ENST00000508715.5PTPN20-22058664aaENSP00000480504.1
 
Protein coding
CCDS73116Q4JDK3 -GENCODE basicTSL:1
ENST00000417004.5PTPN20-209567126aaENSP00000396009.1
 
Protein coding
Q5T1G4 -TSL:5CDS 3' incomplete
ENST00000503851.5PTPN20-214545136aaENSP00000427676.1
 
Protein coding
CCDS73108Q4JDL3-15 -GENCODE basicTSL:1
ENST00000506881.5PTPN20-21745768aaENSP00000422384.1
 
Protein coding
D6RC68 -TSL:3CDS 3' incomplete
ENST00000513159.5PTPN20-22745064aaENSP00000477675.1
 
Protein coding
CCDS73116Q4JDK3 -GENCODE basicTSL:1
ENST00000437863.2PTPN20-210312562aaENSP00000403444.2
 
Nonsense mediated decay
A0A0A0MSU6 -TSL:5
ENST00000508357.5PTPN20-218121362aaENSP00000426681.1
 
Nonsense mediated decay
D6RF36 -TSL:1
ENST00000510335.5PTPN20-2241153104aaENSP00000421453.1
 
Nonsense mediated decay
Q4JDL3-9 -TSL:1
ENST00000466912.5PTPN20-211446No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 9, Coding exons: 7, Transcript length: 1,244 bps, Translation length: 339 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q4JDL3

CCDS

This transcript is a member of the Human CCDS set: CCDS73114

Transcript Support Level (TSL)

TSL:1

Version

ENST00000505814.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.