Human (GRCh38.p14)
Description

protein tyrosine phosphatase non-receptor type 20 [Source:HGNC Symbol;Acc:HGNC:23423]

Gene Synonyms

BA142I17.1, BA42B19.1, CT126, DKFZP566K0524, PTPN20A, PTPN20B

Location
About this transcript

This transcript has 9 exons, is annotated with 7 domains and features, is associated with 31357 variant alleles and maps to 730 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000374339.5PTPN20-2023041420aaENSP00000363459.3
 
Protein coding
CCDS73110Q4JDL3-1 NM_001042357.5MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P2TSL:1
ENST00000374218.6PTPN20-2012872339aaENSP00000363335.2
 
Protein coding
CCDS73114Q4JDL3-4 -GENCODE basicAPPRIS ALT2TSL:5
ENST00000395721.6PTPN20-2052779339aaENSP00000379071.2
 
Protein coding
CCDS73114Q4JDL3-4 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000374346.7PTPN20-2042481226aaENSP00000363466.3
 
Protein coding
CCDS73111Q4JDL3-7 -GENCODE basicTSL:1
ENST00000395725.7PTPN20-2072226145aaENSP00000379075.3
 
Protein coding
CCDS73115Q4JDL3-14 -GENCODE basicTSL:5
ENST00000395722.7PTPN20-206199564aaENSP00000379072.4
 
Protein coding
CCDS73116Q4JDK3 -GENCODE basicTSL:1
ENST00000374342.6PTPN20-203192964aaENSP00000363462.3
 
Protein coding
CCDS73116Q4JDK3 -GENCODE basicTSL:1
ENST00000506080.5PTPN20-2161401339aaENSP00000421921.2
 
Protein coding
CCDS73114Q4JDL3-4 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000511769.5PTPN20-2251339411aaENSP00000424283.1
 
Protein coding
CCDS73105Q4JDL3-2 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000505814.5PTPN20-2151244339aaENSP00000426355.1
 
Protein coding
CCDS73114Q4JDL3-4 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000509599.5PTPN20-221945226aaENSP00000425012.1
 
Protein coding
CCDS73111Q4JDL3-7 -GENCODE basicTSL:1
ENST00000513156.5PTPN20-226913269aaENSP00000425912.1
 
Protein coding
CCDS73107Q4JDL3-11 -GENCODE basicTSL:1
ENST00000502705.5PTPN20-213854206aaENSP00000420995.1
 
Protein coding
CCDS81454Q4JDL3-10 -GENCODE basicTSL:1
ENST00000513266.5PTPN20-228818197aaENSP00000422839.1
 
Protein coding
CCDS81456Q4JDL3-5 -GENCODE basicTSL:1
ENST00000395727.6PTPN20-208790228aaENSP00000379077.2
 
Protein coding
CCDS73109Q4JDL3-6 -GENCODE basicTSL:1
ENST00000509774.5PTPN20-222788217aaENSP00000425362.1
 
Protein coding
CCDS73106Q4JDL3-8 -GENCODE basicTSL:1
ENST00000508602.5PTPN20-219742145aaENSP00000424491.2
 
Protein coding
CCDS73115Q4JDL3-14 -GENCODE basicTSL:1
ENST00000509900.5PTPN20-223693145aaENSP00000423819.1
 
Protein coding
CCDS73115Q4JDL3-14 -GENCODE basicTSL:1
ENST00000513756.5PTPN20-22964064aaENSP00000479990.1
 
Protein coding
CCDS73116Q4JDK3 -GENCODE basicTSL:1
ENST00000502254.5PTPN20-212599145aaENSP00000421404.1
 
Protein coding
CCDS86087Q4JDL3-13 -GENCODE basicTSL:1
ENST00000508715.5PTPN20-22058664aaENSP00000480504.1
 
Protein coding
CCDS73116Q4JDK3 -GENCODE basicTSL:1
ENST00000417004.5PTPN20-209567126aaENSP00000396009.1
 
Protein coding
Q5T1G4 -TSL:5CDS 3' incomplete
ENST00000503851.5PTPN20-214545136aaENSP00000427676.1
 
Protein coding
CCDS73108Q4JDL3-15 -GENCODE basicTSL:1
ENST00000506881.5PTPN20-21745768aaENSP00000422384.1
 
Protein coding
D6RC68 -TSL:3CDS 3' incomplete
ENST00000513159.5PTPN20-22745064aaENSP00000477675.1
 
Protein coding
CCDS73116Q4JDK3 -GENCODE basicTSL:1
ENST00000437863.2PTPN20-210312562aaENSP00000403444.2
 
Nonsense mediated decay
A0A0A0MSU6 -TSL:5
ENST00000508357.5PTPN20-218121362aaENSP00000426681.1
 
Nonsense mediated decay
D6RF36 -TSL:1
ENST00000510335.5PTPN20-2241153104aaENSP00000421453.1
 
Nonsense mediated decay
Q4JDL3-9 -TSL:1
ENST00000466912.5PTPN20-211446No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,481 bps, Translation length: 226 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q4JDL3

CCDS

This transcript is a member of the Human CCDS set: CCDS73111

Transcript Support Level (TSL)

TSL:1

Version

ENST00000374346.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.