Description

zinc finger protein 823 [Source:HGNC Symbol;Acc:HGNC:30936]

Synonyms

HSZFP36

Location
About this transcript

This transcript has 4 exons, is annotated with 46 domains and features, is associated with 217 variations and maps to 12 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
ZNF823-002ENST000003411912423610aaENSP00000340683
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS45981P16415 NM_001080493
NP_001073962
NP_059977
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
ZNF823-001ENST000004319981540469aaENSP00000410654
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J2N8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ZNF823-004ENST0000058612169892aaENSP00000466840
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7EN93 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ZNF823-003ENST0000044052755067aaENSP00000387514
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JU45 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 4 Coding exons: 4 Transcript length: 2,423 bps Translation length: 610 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS45981

Uniprot

This transcript corresponds to the following Uniprot identifiers: P16415

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000341191.9

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays