Description

solute carrier family 22 (organic cation/carnitine transporter), member 5 [Source:HGNC Symbol;Acc:HGNC:10969]

Synonyms

CDSP, OCTN2, SCD

Gene

This transcript is a product of gene ENSG00000197375

This gene has 9 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
SLC22A5-001ENST000002454073237 bp557 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4154O76082 NM_003060
NP_003051
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SLC22A5-201ENST000004350651746 bp581 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7BZC0 O76082 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SLC22A5-004ENST00000415928720 bp240 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7BZC0 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
SLC22A5-005ENST00000447841998 bp37 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SLC22A5-002ENST00000448810852 bp136 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SLC22A5-008ENST00000437841850 bp141 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-F8WCC9 -
SLC22A5-007ENST00000479605561 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SLC22A5-006ENST0000046101310435 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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SLC22A5-003ENST000004753083693 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 4 Coding exons: 2 Transcript length: 850 bps Translation length: 141 residues

Ensembl version

ENST00000437841.3

Type

Known nonsense mediated decay

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
Annotation Attributes

dotter confirmed [Definitions]

Transcript-based displays