Description

solute carrier family 22 (organic cation/carnitine transporter), member 5 [Source:HGNC Symbol;Acc:HGNC:10969]

Synonyms

CDSP, OCTN2, SCD

Gene

This transcript is a product of gene ENSG00000197375

This gene has 9 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
SLC22A5-001ENST000002454073237 bp557 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4154O76082 NM_003060
NP_003051
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SLC22A5-201ENST000004350651746 bp581 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7BZC0 O76082 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SLC22A5-004ENST00000415928720 bp240 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7BZC0 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
SLC22A5-005ENST00000447841998 bp37 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SLC22A5-002ENST00000448810852 bp136 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SLC22A5-008ENST00000437841850 bp141 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-F8WCC9 -
SLC22A5-007ENST00000479605561 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
SLC22A5-006ENST0000046101310435 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
SLC22A5-003ENST000004753083693 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 10 Coding exons: 10 Transcript length: 3,237 bps Translation length: 557 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS4154

Uniprot

This transcript corresponds to the following Uniprot identifiers: O76082

Ensembl version

ENST00000245407.4

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays