Description

synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]

Synonyms

KIAA1938, RASA5, SYNGAP

Location
Gene

This transcript is a product of gene ENSG00000197283

This gene has 8 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
SYNGAP1-001ENST000004186005916 bp1343 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34434Q96PV0 NM_006772
NP_006763
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SYNGAP1-003ENST000004289824339 bp1284 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q96PV0 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SYNGAP1-009ENST000004493723847 bp1279 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B7ZCA0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SYNGAP1-007ENST00000486399593 bp76 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SYNGAP1-004ENST000002937484556 bp1284 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-Q96PV0 -
SYNGAP1-005ENST00000495633260 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
SYNGAP1-002ENST000004795102061 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
SYNGAP1-008ENST00000470232394 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 19 Coding exons: 19 Transcript length: 5,916 bps Translation length: 1,343 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS34434

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96PV0

Ensembl version

ENST00000418600.3

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays