Description

laminin, beta 3 [Source:HGNC Symbol;Acc:HGNC:6490]

Synonyms

BM600-125kDa, kalinin-140kDa, LAMNB1, nicein-125kDa

Gene

This transcript is a product of gene ENSG00000196878

This gene has 5 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
LAMB3-201ENST0000039191143051172 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1487Q13751 Q5THA1 X1WI29
NM_001017402
NP_001017402
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
LAMB3-001ENST0000035608240551172 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1487Q13751 Q5THA1 X1WI29
NM_000228
NP_000219
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
LAMB3-002ENST0000036703039311172 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1487Q13751 Q5THA1 X1WI29
NM_001127641
NP_001121113
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
LAMB3-003ENST00000415782908188 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5THA1 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

LAMB3-004ENST00000455193710160 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-X1WI29 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 23 Coding exons: 22 Transcript length: 4,055 bps Translation length: 1,172 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS1487

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13751

Transcript Support Level

1

Ensembl version

ENST00000356082.6

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays