Description

S100 calcium binding protein A2 [Source:HGNC Symbol;Acc:HGNC:10492]

Synonyms

CAN19, S100L

About this transcript

This transcript has 3 exons, is annotated with 3 domains and features, is associated with 39 variations and maps to 11 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
S100A2-001ENST0000036870899897aaENSP00000357697
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1044P29034 NM_005978
NP_005969
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
S100A2-005ENST0000048743075297aaENSP00000473260
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1044P29034 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
S100A2-002ENST0000036870945797aaENSP00000357698
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1044P29034 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
S100A2-003ENST0000036871045397aaENSP00000357699
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1044P29034 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
S100A2-006ENST0000049714069764aaENSP00000473489
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-R4GN49 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
S100A2-004ENST0000036870755695aaENSP00000357696
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5RHS7 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 3 Coding exons: 2 Transcript length: 453 bps Translation length: 97 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS1044

Uniprot

This transcript corresponds to the following Uniprot identifiers: P29034

Transcript Support Level (TSL)

TSL:3

Ensembl version

ENST00000368710.4

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays