Description

GM2 ganglioside activator [Source:HGNC Symbol;Acc:HGNC:4367]

Synonyms

SAP-3

About this transcript

This transcript has 4 exons, is annotated with 4 domains and features, is associated with 67 variations and maps to 31 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
GM2A-001ENST000003571643896193aaENSP00000349687
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4313P17900 NM_000405
NM_001167607
NP_000396
NP_001161079
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
GM2A-002ENST00000523004643104aaENSP00000430541
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YBY3 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GM2A-004ENST00000523466553146aaENSP00000429100
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E5RJD0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 4 Coding exons: 4 Transcript length: 3,896 bps Translation length: 193 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS4313

Uniprot

This transcript corresponds to the following Uniprot identifiers: P17900

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000357164.3

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays