Description

major histocompatibility complex, class II, DQ alpha 1 [Source:HGNC Symbol;Acc:HGNC:4942]

Synonyms

CELIAC1, HLA-DQA

Location
Gene

This transcript is a product of gene ENSG00000196735

This gene has 7 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
HLA-DQA1-001ENST000003431391591255 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4752F6UB03 O19703 P01909
Q30065 Q30066 Q67A92
Q67A93 Q67AA5 Q67AA6
Q67AA7 Q67AB5 Q67AB6
Q67AB7 Q67AB8 Q67AB9
Q67AC0 Q67AC1 Q67AC2
Q67AC3 Q67AC4 Q67AH6
Q67AH7 Q67AH8 Q67AH9
Q67AI0 Q67AI1 Q67AI2
NM_002122
NP_002113
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
HLA-DQA1-004ENST000003953631206255 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4752F6UB03 O19703 P01909
Q30065 Q30066 Q67A92
Q67A93 Q67AA5 Q67AA6
Q67AA7 Q67AB5 Q67AB6
Q67AB7 Q67AB8 Q67AB9
Q67AC0 Q67AC1 Q67AC2
Q67AC3 Q67AC4 Q67AH6
Q67AH7 Q67AH8 Q67AH9
Q67AI0 Q67AI1 Q67AI2
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
HLA-DQA1-009ENST000003749491060255 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4752F6UB03 O19703 P01909
Q30065 Q30066 Q67A92
Q67A93 Q67AA5 Q67AA6
Q67AA7 Q67AB5 Q67AB6
Q67AB7 Q67AB8 Q67AB9
Q67AC0 Q67AC1 Q67AC2
Q67AC3 Q67AC4 Q67AH6
Q67AH7 Q67AH8 Q67AH9
Q67AI0 Q67AI1 Q67AI2
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
HLA-DQA1-007ENST00000496318696214 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PMV2 F6UB03 O19703
Q67A92 Q67A93 Q67AA5
Q67AA6 Q67AA7 Q67AB5
Q67AB6 Q67AB7 Q67AB8
Q67AB9 Q67AC0 Q67AC1
Q67AC2 Q67AC3 Q67AC4
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-DQA1-010ENST0000042286352024 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6UB03 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-DQA1-002ENST00000482745213553 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E9PI37 F6UB03 O19703
Q67A92 Q67A93 Q67AA5
Q67AA6 Q67AA7 Q67AB5
Q67AB6 Q67AB7 Q67AB8
Q67AB9 Q67AC0 Q67AC1
Q67AC2 Q67AC3 Q67AC4
-TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HLA-DQA1-003ENST000004606335450No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 6 Coding exons: 2 Transcript length: 2,135 bps Translation length: 53 residues

Transcript Support Level

NA

Ensembl version

ENST00000482745.3

Type

Known nonsense mediated decay

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays