Description

major histocompatibility complex, class II, DQ alpha 1 [Source:HGNC Symbol;Acc:HGNC:4942]

Synonyms

CELIAC1, HLA-DQA

Location
About this transcript

This transcript has 5 exons, is annotated with 15 domains and features, is associated with 200 variations and maps to 23 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
HLA-DQA1-001ENST000003431391591255aaENSP00000339398
 
Protein coding
CCDS4752P01909 NM_002122
NP_002113
TSL:NAGENCODE basicAPPRIS P1
HLA-DQA1-004ENST000003953631206255aaENSP00000378767
 
Protein coding
CCDS4752P01909 -TSL:NAGENCODE basicAPPRIS P1
HLA-DQA1-009ENST000003749491060255aaENSP00000364087
 
Protein coding
CCDS4752P01909 -TSL:NAGENCODE basicAPPRIS P1
HLA-DQA1-007ENST00000496318696214aaENSP00000437302
 
Protein coding
-E9PMV2 -CDS 3' incompleteTSL:NA
HLA-DQA1-010ENST0000042286352024aaENSP00000405797
 
Protein coding
-F6UB03 -CDS 3' incompleteTSL:NA
HLA-DQA1-002ENST00000482745213553aaENSP00000436546
 
Nonsense mediated decay
-E9PI37 -TSL:NA
HLA-DQA1-003ENST000004606335450No protein-
 
Retained intron
---TSL:NA
Statistics

Exons: 5 Coding exons: 4 Transcript length: 1,591 bps Translation length: 255 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS4752

Uniprot

This transcript corresponds to the following Uniprot identifiers: P01909

Transcript Support Level (TSL)

TSL:NA

Ensembl version

ENST00000343139.9

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays