Description

major histocompatibility complex, class II, DQ alpha 1 [Source:HGNC Symbol;Acc:4942]

Location
Gene

This transcript is a product of gene ENSG00000196735

This gene has 7 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLength (bp)Protein IDLength (aa)BiotypeCDS incompleteCCDSGENCODE basic
HLA-DQA1-001ENST000003431391591ENSP00000339398255Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS4752YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
HLA-DQA1-004ENST000003953631206ENSP00000378767255Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS4752YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
HLA-DQA1-009ENST000003749491060ENSP00000364087255Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS4752YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
HLA-DQA1-007ENST00000496318696ENSP00000437302214Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'--
HLA-DQA1-010ENST00000422863520ENSP0000040579724Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'--
HLA-DQA1-002ENST000004827452135ENSP0000043654653Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. ---
HLA-DQA1-003ENST000004606335450No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
Statistics

Exons: 5 Coding exons: 4 Transcript length: 1,591 bps Translation length: 255 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS4752

Ensembl version

ENST00000343139.5

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:
OTTHUMT00000076176 (version 3)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays