Description

hippocampus abundant transcript-like 2 [Source:HGNC Symbol;Acc:HGNC:23672]

Synonyms

MGC12945

Location
About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 25 variations and maps to 24 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtFlags
HIATL2-001ENST00000602917786150aaENSP00000473444
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-R4GN14 TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P5

PRINCIPAL5 - APPRIS candidate principal isoform (longest coding sequence).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

HIATL2-201ENST00000375223619134aaENSP00000364371
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5VZR4 TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

HIATL2-002ENST00000506067548No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 5 Coding exons: 5 Transcript length: 619 bps Translation length: 134 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5VZR4

Transcript Support Level (TSL)

TSL:5

Ensembl version

ENST00000375223.4

Type

Known protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Stop codons

This transcript has a variant, rs7026211, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HapMap-CEU.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays