Description

hippocampus abundant transcript-like 2 [Source:HGNC Symbol;Acc:HGNC:23672]

Synonyms

MGC12945

Location
Gene

This transcript is a product of gene ENSG00000196312

This gene has 3 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtFlags
HIATL2-001ENST00000602917786150 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-R4GN14 TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence)
Glossary entry for APPRIS
APPRIS website
HIATL2-201ENST00000375223619134 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5VZR4 TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform
Glossary entry for APPRIS
APPRIS website
HIATL2-002ENST00000506067548No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
--TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 5 Coding exons: 5 Transcript length: 619 bps Translation length: 134 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q5VZR4

Transcript Support Level

5

Ensembl version

ENST00000375223.4

Type

Known protein coding

Prediction Method

Annotation produced by the Ensembl genebuild.

Stop codons

This transcript has a variant, rs7026211, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HapMap-HCB, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HapMap-CEU.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays