Description

major histocompatibility complex, class II, DR beta 1 [Source:HGNC Symbol;Acc:HGNC:4948]

Synonyms

HLA-DR1B

Location
About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 417 variations and maps to 43 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
HLA-DRB1-001ENST000003600041229266aaENSP00000353099
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS47409D7RIH8 P01911 P04229
Q29974 Q9GIY3 X5DNQ0
NM_002124
NP_002115
TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

HLA-DRB1-201ENST00000611060920266aaENSP00000480667
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087WX18 -TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1

ALTERNATIVE1 - APPRIS candidate principal isoform that is conserved in at least three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 6 Coding exons: 6 Transcript length: 1,229 bps Translation length: 266 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS47409

Uniprot

This transcript corresponds to the following Uniprot identifiers: P01911, P04229, Q29974, Q9GIY3

Transcript Support Level (TSL)

TSL:NA

Ensembl version

ENST00000360004.5

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays