Transcript: ENST00000360004.6 HLA-DRB1-201

Description

major histocompatibility complex, class II, DR beta 1 [Source:HGNC Symbol;Acc:HGNC:4948]

Gene Synonyms

HLA-DR1B

Location

Chromosome 6: 32,578,775-32,589,848 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 167 domains and features, is associated with 12333 variant alleles and maps to 931 oligo probes.

Gene

This transcript is a product of gene ENSG00000196126.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000360004.6	HLA-DRB1-201	1223	266aa	ENSP00000353099.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47409	D7RIH8 P01911 X5DNQ0	NM_002124.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000696610.1	HLA-DRB1-202	2243	94aa	ENSP00000512754.1	Nonsense mediated decay		A0A8Q3WLF4	-	-
ENST00000696611.1	HLA-DRB1-203	1902	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000696613.1	HLA-DRB1-205	813	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000696614.1	HLA-DRB1-206	770	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	-
ENST00000696612.1	HLA-DRB1-204	1803	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 1,223 bps, Translation length: 266 residues

MANE

This MANE Select transcript contains ENSP00000353099 and matches to NM_002124.4 and NP_002115.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: P01911

CCDS

This transcript is a member of the Human CCDS set: CCDS47409

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000360004.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000360004.6 HLA-DRB1-201

Summary

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Transcript: ENST00000360004.6 HLA-DRB1-201

Summary

About Us

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