Description

ceroid-lipofuscinosis, neuronal 3 [Source:HGNC Symbol;Acc:2074]

Location
Gene

This transcript is a product of gene ENSG00000188603

This gene has 41 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLength (bp)Protein IDLength (aa)BiotypeCDS incompleteCCDSGENCODE basic
CLN3-001ENST000005694302374ENSP00000454229438Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS10632YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-205ENST000003600191913ENSP00000353116438Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS10632YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-204ENST000003599841877ENSP00000353073438Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS10632YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-206ENST000005353921712ENSP00000443221360Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-201ENST000003546301619ENSP00000346650421Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-006ENST000003334961580ENSP00000329171414Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-007ENST000003956531577ENSP00000379014338Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-202ENST000003554771526ENSP00000347660390Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-012ENST000003578571519ENSP00000350523384Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-008ENST000003578061469ENSP00000350457339Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-005ENST000005679631325ENSP00000455387341Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-020ENST000005653161266ENSP00000456117421Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-017ENST00000568443886ENSP00000454899175Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'--
CLN3-203ENST00000357076879ENSP00000349586253Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-009ENST00000568558735ENSP00000455603184Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'--
CLN3-030ENST00000565688650ENSP00000456122176Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'--
CLN3-031ENST00000561505609ENSP00000457615121Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'--
CLN3-014ENST00000565778569ENSP00000458015167Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'--
CLN3-027ENST00000567804557ENSP0000045536574Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'--
CLN3-035ENST000005651401225ENSP00000455342181Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. ---
CLN3-011ENST000005684221224ENSP00000455549132Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. ---
CLN3-019ENST000005690301109ENSP00000454680253Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. ---
CLN3-018ENST00000566057931ENSP00000456693105Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. ---
CLN3-015ENST00000567495762ENSP00000456013181Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. ---
CLN3-010ENST00000568497577ENSP0000045641482Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. ---
CLN3-034ENST00000564091539ENSP00000454466135Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. 5'--
CLN3-026ENST00000567160616No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
CLN3-029ENST00000565236582No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.---
CLN3-024ENST00000566816570No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.---
CLN3-028ENST00000566472551No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.---
CLN3-025ENST00000566040544No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.---
CLN3-032ENST00000568472477No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.---
CLN3-016ENST00000565047461No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.---
CLN3-002ENST000005638743081No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
CLN3-021ENST000005684521445No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
CLN3-023ENST000005616891286No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
CLN3-022ENST000005680761228No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
CLN3-013ENST000005660831182No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
CLN3-004ENST000005645741159No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
CLN3-003ENST000005668241009No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
CLN3-033ENST00000565354759No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
Statistics

Exons: 12 Coding exons: 12 Transcript length: 1,469 bps Translation length: 339 residues

Ensembl version

ENST00000357806.7

Type

Novel protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:
OTTHUMT00000430942 (version 1)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays