Description

ceroid-lipofuscinosis, neuronal 3 [Source:HGNC Symbol;Acc:HGNC:2074]

Synonyms

BTS, JNCL

Location
Gene

This transcript is a product of gene ENSG00000188603

This gene has 38 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
CLN3-001ENST000005694302374 bp438 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10632B4DFF3 B4DXV0 H3BPL0
Q13286
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLN3-203ENST000003600191913 bp438 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10632B4DFF3 B4DXV0 H3BPL0
Q13286
NM_000086
NM_001042432
NP_000077
NP_001035897
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLN3-202ENST000003599841733 bp336 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-O95086 Q13286 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLN3-201ENST000003554771660 bp181 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BPL0 Q13286 Q9UBD8
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLN3-006ENST000003334961580 bp414 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B4DXL3 H3BPL0 Q2TA70
NM_001286104
NP_001273033
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLN3-007ENST000003956531577 bp338 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B4DMY6 H3BUF8 NM_001286105
NP_001273034
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLN3-012ENST000003578571519 bp384 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B4DFF3 B4DXV0 NM_001286109
NM_001286110
NP_001273038
NP_001273039
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLN3-008ENST000003578061469 bp339 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BPL0 H3BQ48 Q13286
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLN3-005ENST000005679631325 bp341 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BPL0 H3BPM8 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLN3-020ENST000005653161266 bp421 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BPL0 Q13286 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CLN3-017ENST00000568443886 bp175 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BNK7 Q9UP05 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
CLN3-009ENST00000568558735 bp184 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BQ48 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
CLN3-030ENST00000565688650 bp176 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BR84 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
CLN3-031ENST00000561505609 bp121 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BUF8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
CLN3-014ENST00000565778569 bp167 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BPL0 O95090 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
CLN3-027ENST00000567804557 bp74 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H3BPL0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
CLN3-035ENST000005651401225 bp181 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H3BPL0 Q9UBD8 -
CLN3-011ENST000005684221224 bp132 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H3BQ08 -
CLN3-019ENST000005690301109 bp253 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A8JYI8 H3BPL0 Q13286
-
CLN3-018ENST00000566057931 bp105 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-Q9UBH5 -
CLN3-015ENST00000567495762 bp181 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H3BPL0 Q9UBD8 -
CLN3-010ENST00000568497577 bp82 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H3BPL0 H3BRU8 -
CLN3-034ENST00000564091539 bp135 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
CLN3-026ENST00000567160616 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
CLN3-029ENST00000565236582 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
CLN3-024ENST00000566816570 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
CLN3-028ENST00000566472551 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
CLN3-025ENST00000566040544 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
CLN3-032ENST00000568472477 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
CLN3-016ENST00000565047461 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
CLN3-002ENST000005638743081 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
CLN3-021ENST000005684521445 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
CLN3-023ENST000005616891286 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
CLN3-022ENST000005680761228 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
CLN3-013ENST000005660831182 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
CLN3-004ENST000005645741159 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
CLN3-003ENST000005668241009 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
CLN3-033ENST00000565354759 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 15 Coding exons: 14 Transcript length: 1,580 bps Translation length: 414 residues

Ensembl version

ENST00000333496.10

Type

Novel protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays