Description

short stature homeobox [Source:HGNC Symbol;Acc:HGNC:10853]

Synonyms

GCFX, PHOG, SHOXY, SS

Location
About this transcript

This transcript has 6 exons, is annotated with 7 domains and features, is associated with 206 variations and maps to 32 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SHOX-202ENST000003815783757292aaENSP00000370990
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14107A0A024R385 O15266 NM_000451
NP_000442
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SHOX-201ENST000003340601951225aaENSP00000335505
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14106O15266 NM_006883
NP_006874
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SHOX-003ENST000005549711902292aaENSP00000452016
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14107A0A024R385 O15266 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SHOX-001ENST000003815751351225aaENSP00000370987
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14106O15266 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
Statistics

Exons: 6 Coding exons: 5 Transcript length: 1,951 bps Translation length: 225 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS14106

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15266

Transcript Support Level (TSL)

TSL:5

Ensembl version

ENST00000334060.6

Type

Known protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays