Description

sodium channel, voltage gated, type X alpha subunit [Source:HGNC Symbol;Acc:HGNC:10582]

Synonyms

hPN3, Nav1.8, PN3, SNS

Location
About this transcript

This transcript has 27 exons, is annotated with 44 domains and features, is associated with 1038 variations and maps to 50 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SCN10A-001ENST0000044908264181956aaENSP00000390600
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS33736Q9Y5Y9 NM_001293306
NM_006514
NP_001280235
NP_006505
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 27 Coding exons: 27 Transcript length: 6,418 bps Translation length: 1,956 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS33736

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9Y5Y9

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000449082.2

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays