Transcript: ENST00000507866.6 SORCS2-202

Description

sortilin related VPS10 domain containing receptor 2 [Source:HGNC Symbol;Acc:HGNC:16698]

Gene Synonyms

KIAA1329

Location

Chromosome 4: 7,192,538-7,742,827 forward strand.

About this transcript

This transcript has 27 exons, is annotated with 26 domains and features, is associated with 299931 variant alleles and maps to 932 oligo probes.

Gene

This transcript is a product of gene ENSG00000184985.17 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000507866.6	SORCS2-202	6152	1159aa	ENSP00000422185.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47008	Q96PQ0	NM_020777.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000505529.1	SORCS2-201	762	101aa	ENSP00000424194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9I2	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000511199.1	SORCS2-203	532	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 27, Coding exons: 27, Transcript length: 6,152 bps, Translation length: 1,159 residues

MANE

This MANE Select transcript contains ENSP00000422185 and matches to NM_020777.3 and NP_065828.2

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96PQ0

CCDS

This transcript is a member of the Human CCDS set: CCDS47008

Transcript Support Level (TSL)

TSL:1

Version

ENST00000507866.6

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000507866.6 SORCS2-202

Summary

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Transcript: ENST00000507866.6 SORCS2-202

Summary

About Us

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