Description

solute carrier family 35 (GDP-fucose transporter), member C1 [Source:HGNC Symbol;Acc:HGNC:20197]

Synonyms

FLJ11320, FUCT1

Location
About this transcript

This transcript has 3 exons, is annotated with 13 domains and features, is associated with 121 variations and maps to 13 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SLC35C1-001ENST000003141344171364aaENSP00000313318
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7914B3KQH0 Q96A29 NM_018389
NP_060859
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SLC35C1-002ENST000004425281756351aaENSP00000412408
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44575Q96A29 NM_001145265
NM_001145266
NP_001138737
NP_001138738
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SLC35C1-003ENST00000530471695165aaENSP00000432669
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PPI4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SLC35C1-004ENST0000052681758272aaENSP00000432145
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PS26 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 3 Coding exons: 2 Transcript length: 1,756 bps Translation length: 351 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS44575

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96A29

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000442528.2

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays