Description

solute carrier family 35 (GDP-fucose transporter), member C1 [Source:HGNC Symbol;Acc:HGNC:20197]

Synonyms

FLJ11320, FUCT1

Location
Gene

This transcript is a product of gene ENSG00000181830

This gene has 4 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
SLC35C1-001ENST000003141344171364 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7914B3KQH0 E9PPI4 E9PS26
Q96A29 Q96K20
NM_018389
NP_060859
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SLC35C1-002ENST000004425281756351 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44575E9PPI4 E9PS26 Q96A29
NM_001145265
NM_001145266
NP_001138737
NP_001138738
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SLC35C1-003ENST00000530471695165 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PPI4 E9PS26 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SLC35C1-004ENST0000052681758272 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PS26 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 3 Coding exons: 2 Transcript length: 1,756 bps Translation length: 351 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS44575

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96A29

Transcript Support Level

1

Ensembl version

ENST00000442528.2

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays