Description

fukutin related protein [Source:HGNC Symbol;Acc:HGNC:17997]

Synonyms

LGMD2I, MDC1C

Location
Gene

This transcript is a product of gene ENSG00000181027

This gene has 27 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
FKRP-001ENST000003185843332495 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS12691A0A024R0R7 M0QX03 M0QXT8
M0QYR2 M0QYV4 M0QYV8
M0QZ46 M0QZ68 M0R005
M0R016 M0R092 M0R0G0
M0R112 M0R1M1 M0R274
M0R2U3 M0R342 Q9H9S5
NM_001039885
NM_024301
NP_001034974
NP_077277
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
FKRP-002ENST000003919092801495 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS12691A0A024R0R7 M0QX03 M0QXT8
M0QYR2 M0QYV4 M0QYV8
M0QZ46 M0QZ68 M0R005
M0R016 M0R092 M0R0G0
M0R112 M0R1M1 M0R274
M0R2U3 M0R342 Q9H9S5
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
FKRP-013ENST000005938776334 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-016ENST00000601299633162 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0QX03 M0QXT8 M0QYR2
M0QYV4 M0QYV8 M0QZ46
M0QZ68 M0R005 M0R016
M0R092 M0R0G0 M0R112
M0R274 M0R2U3 M0R342
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-005ENST0000060062959780 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0QXT8 M0QYR2 M0QYV4
M0R016 M0R092 M0R112
M0R274 M0R2U3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-025ENST0000059387559386 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0QXT8 M0QYR2 M0QYV4
M0QZ46 M0R016 M0R092
M0R112 M0R274 M0R2U3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-019ENST0000059827159229 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0R092 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-011ENST00000593800591101 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0QXT8 M0QYR2 M0QYV4
M0QZ46 M0R016 M0R092
M0R0G0 M0R112 M0R274
M0R2U3 M0R342
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-021ENST0000059731358459 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0R092 M0R274 M0R2U3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-026ENST0000059557058361 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0R016 M0R092 M0R274
M0R2U3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-027ENST00000593902577137 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0QX03 M0QXT8 M0QYR2
M0QYV4 M0QZ46 M0QZ68
M0R005 M0R016 M0R092
M0R0G0 M0R112 M0R274
M0R2U3 M0R342
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-008ENST0000060225056953 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0R092 M0R2U3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-020ENST0000059646056968 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0QXT8 M0R016 M0R092
M0R274 M0R2U3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-024ENST00000600227559106 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0QX03 M0QXT8 M0QYR2
M0QYV4 M0QZ46 M0R016
M0R092 M0R0G0 M0R112
M0R274 M0R2U3 M0R342
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-009ENST0000059586855670 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0QXT8 M0R016 M0R092
M0R112 M0R274 M0R2U3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-003ENST0000060083455172 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0QXT8 M0QYR2 M0R016
M0R092 M0R112 M0R274
M0R2U3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-004ENST00000600005548114 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0QX03 M0QXT8 M0QYR2
M0QYV4 M0QZ46 M0QZ68
M0R016 M0R092 M0R0G0
M0R112 M0R274 M0R2U3
M0R342
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-017ENST0000059446754535 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0R1M1 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-010ENST0000060218148295 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0QXT8 M0QYR2 M0QYV4
M0QZ46 M0R016 M0R092
M0R112 M0R274 M0R2U3
M0R342
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-015ENST00000600646584No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-006ENST00000600977576No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-023ENST00000596974568No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-007ENST00000600872560No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-022ENST00000597339420No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-014ENST00000600681383No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-012ENST00000597403322No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FKRP-018ENST00000593995545No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 4 Coding exons: 1 Transcript length: 2,801 bps Translation length: 495 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS12691

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H9S5

Transcript Support Level

2

Ensembl version

ENST00000391909.5

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays