Description

major histocompatibility complex, class II, DQ beta 1 [Source:HGNC Symbol;Acc:4944]

Location
Gene

This transcript is a product of gene ENSG00000179344

This gene has 8 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLength (bp)Protein IDLength (aa)BiotypeCCDSGENCODE basic
HLA-DQB1-003ENST000003990841734ENSP00000382034261Protein codingGenes and/or transcript that contains an open reading frame (ORF).CCDS43451YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
HLA-DQB1-002ENST000003749431656ENSP00000364080269Protein codingGenes and/or transcript that contains an open reading frame (ORF).CCDS59006YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
HLA-DQB1-001ENST000004346511642ENSP00000407332261Protein codingGenes and/or transcript that contains an open reading frame (ORF).CCDS43451YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
HLA-DQB1-004ENST000003990791501ENSP00000382029224Protein codingGenes and/or transcript that contains an open reading frame (ORF).-YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
HLA-DQB1-007ENST000003990821219ENSP00000382032134Protein codingGenes and/or transcript that contains an open reading frame (ORF).-YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
HLA-DQB1-008ENST00000484729783ENSP00000436686136Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. --
HLA-DQB1-009ENST00000460185428No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.-YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
HLA-DQB1-005ENST000004876764644No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.--
Statistics

Exons: 4 Coding exons: 4 Transcript length: 1,501 bps Translation length: 224 residues

Ensembl version

ENST00000399079.3

Type

Novel protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:
OTTHUMT00000276128 (version 1)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays