Human (GRCh38.p14)
Description

chromodomain helicase DNA binding protein 9 [Source:HGNC Symbol;Acc:HGNC:25701]

Gene Synonyms

BC022889, FLJ12178, KIAA0308

Location
About this transcript

This transcript has 39 exons, is annotated with 71 domains and features, is associated with 110073 variant alleles and maps to 1333 oligo probes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000447540.6CHD9-203115472897aaENSP00000396345.2
 
Protein coding
CCDS76865Q3L8U1-1 NM_001308319.2MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P4TSL:5
ENST00000566029.5CHD9-218131102881aaENSP00000457466.1
 
Protein coding
CCDS45485Q3L8U1-2 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000564845.5CHD9-213115042881aaENSP00000455307.1
 
Protein coding
CCDS45485Q3L8U1-2 -GENCODE basicAPPRIS ALT2TSL:1
ENST00000398510.7CHD9-202113372897aaENSP00000381522.3
 
Protein coding
CCDS76865Q3L8U1-1 -GENCODE basicAPPRIS P4TSL:1
ENST00000615216.4CHD9-22110603963aaENSP00000478361.1
 
Protein coding
A0A087WU44 -GENCODE basicTSL:5
ENST00000565803.2CHD9-21695652424aaENSP00000457355.2
 
Protein coding
CCDS92161H3BTW3 -GENCODE basicAPPRIS ALT1TSL:5
ENST00000565832.5CHD9-2172169632aaENSP00000456793.1
 
Protein coding
H3BSP3 -TSL:1CDS 3' incomplete
ENST00000565442.1CHD9-215703125aaENSP00000456415.1
 
Protein coding
H3BRU9 -TSL:2CDS 3' incomplete
ENST00000563410.1CHD9-20848853aaENSP00000457929.1
 
Protein coding
H3BV31 -TSL:2CDS 3' incomplete
ENST00000562785.1CHD9-20535991aaENSP00000460155.1
 
Protein coding
I3L340 -TSL:3CDS 3' incomplete
ENST00000564641.1CHD9-212589113aaENSP00000462008.1
 
Nonsense mediated decay
J3KRH9 -TSL:4CDS 5' incomplete
ENST00000564600.6CHD9-211539122aaENSP00000462685.1
 
Nonsense mediated decay
J3KSW5 -TSL:4CDS 5' incomplete
ENST00000564582.2CHD9-210968No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000565119.1CHD9-214824No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000561869.1CHD9-204720No protein-
 
Protein coding CDS not defined
--TSL:2
ENST00000569794.1CHD9-220485No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000562791.1CHD9-206242No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000219084.10CHD9-2018739No protein-
 
Retained intron
--TSL:1
ENST00000564255.5CHD9-2092896No protein-
 
Retained intron
--TSL:5
ENST00000569225.5CHD9-2191862No protein-
 
Retained intron
--TSL:2
ENST00000562806.1CHD9-207400No protein-
 
Retained intron
--TSL:3
Statistics

Exons: 39, Coding exons: 38, Transcript length: 11,547 bps, Translation length: 2,897 residues

MANE

This MANE Select transcript contains ENSP00000396345 and matches to NM_001308319.2 and NP_001295248.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q3L8U1

CCDS

This transcript is a member of the Human CCDS set: CCDS76865

Transcript Support Level (TSL)

TSL:5

Version

ENST00000447540.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.