Description

cardiotrophin-like cytokine factor 1 [Source:HGNC Symbol;Acc:HGNC:17412]

Synonyms

BSF-3, BSF3, CISS2, CLC, NNT-1, NNT1, NR6

Location
About this transcript

This transcript has 3 exons, is annotated with 4 domains and features, is associated with 84 variations and maps to 19 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CLCF1-002ENST000003124381844225aaENSP00000309338
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS31617Q9UBD9 NM_013246
NP_037378
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P3

PRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CLCF1-001ENST00000533438967215aaENSP00000434122
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS53666Q9UBD9 NM_001166212
NP_001159684
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 3 Coding exons: 3 Transcript length: 1,844 bps Translation length: 225 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS31617

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UBD9

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000312438.7

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays