Description

ataxia telangiectasia and Rad3 related [Source:HGNC Symbol;Acc:HGNC:882]

Synonyms

FRP1, MEC1, SCKL, SCKL1

Gene

This transcript is a product of gene ENSG00000175054

This gene has 10 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
ATR-001ENST000003507218249 bp2644 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3124Q13535 NM_001184
NP_001175
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATR-002ENST000005132915190 bp457 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
ATR-005ENST00000515149929 bp309 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RIG7 -CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
ATR-003ENST00000507148724 bp100 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-D6RFJ6 -
ATR-013ENST00000504521718 bp80 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H0Y8Y6 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
ATR-014ENST00000515810553 bp39 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H0Y8R8 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
ATR-008ENST00000514393552 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---
ATR-007ENST00000507620837 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
ATR-010ENST00000511016681 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
ATR-011ENST00000515863641 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
Statistics

Exons: 47 Coding exons: 47 Transcript length: 8,249 bps Translation length: 2,644 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS3124

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13535

Ensembl version

ENST00000350721.5

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays