Transcript: ENST00000312600.4 PABPC5-201

Description

poly(A) binding protein cytoplasmic 5 [Source:HGNC Symbol;Acc:HGNC:13629]

Gene Synonyms

PABP5

Location

Chromosome X: 91,434,839-91,438,584 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 30 domains and features, is associated with 1637 variant alleles and maps to 341 oligo probes.

Gene

This transcript is a product of gene ENSG00000174740.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000312600.4	PABPC5-201	3206	382aa	ENSP00000308012.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14460	Q96DU9-1	NM_080832.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000373105.1	PABPC5-202	1262	218aa	ENSP00000362197.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5JQF3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 3,206 bps, Translation length: 382 residues

MANE

This MANE Select transcript contains ENSP00000308012 and matches to NM_080832.3 and NP_543022.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96DU9

CCDS

This transcript is a member of the Human CCDS set: CCDS14460

Transcript Support Level (TSL)

TSL:1

Version

ENST00000312600.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000312600.4 PABPC5-201

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Transcript: ENST00000312600.4 PABPC5-201

Summary

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