Description

serum amyloid A1 [Source:HGNC Symbol;Acc:HGNC:10513]

Synonyms

PIG4, SAA, TP53I4

Location
About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 64 variations and maps to 33 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SAA1-003ENST00000405158675122aaENSP00000384906
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7835P0DJI8 NM_000331
NP_000322
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SAA1-001ENST00000356524615122aaENSP00000348918
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7835P0DJI8 NM_199161
NP_954630
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SAA1-002ENST00000532858583122aaENSP00000436866
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7835E9PQD6 NM_001178006
NP_001171477
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 4 Coding exons: 3 Transcript length: 675 bps Translation length: 122 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS7835

Uniprot

This transcript corresponds to the following Uniprot identifiers: P0DJI8

Transcript Support Level (TSL)

TSL:5

Ensembl version

ENST00000405158.2

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays