Description

serum amyloid A1 [Source:HGNC Symbol;Acc:HGNC:10513]

Synonyms

PIG4, SAA, TP53I4

Location
About this transcript

This transcript has 4 exons, is annotated with 7 domains and features, is associated with 64 variations and maps to 26 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SAA1-003ENST00000405158675122aaENSP00000384906
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7835P0DJI8 NM_000331
NP_000322
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SAA1-001ENST00000356524615122aaENSP00000348918
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7835P0DJI8 NM_199161
NP_954630
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SAA1-002ENST00000532858583122aaENSP00000436866
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7835E9PQD6 NM_001178006
NP_001171477
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 4 Coding exons: 3 Transcript length: 615 bps Translation length: 122 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS7835

Uniprot

This transcript corresponds to the following Uniprot identifiers: P0DJI8

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000356524.7

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays