Transcript: ENST00000594136.2 RAB4B-EGLN2-201

Description

RAB4B-EGLN2 readthrough (NMD candidate) [Source:HGNC Symbol;Acc:HGNC:44465]

Gene Synonyms

RERT-LNCRNA

Location

Chromosome 19: 40,778,271-40,808,418 forward strand.

About this transcript

This transcript has 12 exons, is associated with 15794 variant alleles and maps to 753 oligo probes.

Gene

This transcript is a product of gene ENSG00000171570.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000594136.2	RAB4B-EGLN2-201	2774	213aa	ENSP00000469872.1	Nonsense mediated decay	CCDS33030	A0A024R0K8	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000601949.5	RAB4B-EGLN2-203	482	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000596216.2	RAB4B-EGLN2-202	932	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 12, Coding exons: 7, Transcript length: 2,774 bps, Translation length: 213 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS33030

Transcript Support Level (TSL)

TSL:2

Version

ENST00000594136.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000594136.2 RAB4B-EGLN2-201

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Transcript: ENST00000594136.2 RAB4B-EGLN2-201

Summary

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