Description

keratin 6C, type II [Source:HGNC Symbol;Acc:HGNC:20406]

Synonyms

KRT6E

Location
About this transcript

This transcript has 9 exons, is annotated with 20 domains and features, is associated with 290 variations and maps to 59 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
KRT6C-001ENST000002522502289564aaENSP00000252250
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8829P48668 NM_173086
NP_775109
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

KRT6C-002ENST00000553087911No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 9 Coding exons: 9 Transcript length: 2,289 bps Translation length: 564 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS8829

Uniprot

This transcript corresponds to the following Uniprot identifiers: P48668

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000252250.6

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays