Description

uromodulin [Source:HGNC Symbol;Acc:HGNC:12559]

Location
Gene

This transcript is a product of gene ENSG00000169344

This gene has 13 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
UMOD-201ENST000003025092477640 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10583B3KXM9 I3L1A9 I3L1M3
I3L2J2 I3L4B0 I3L4Y6
P07911 Q8NHW8
NM_001008389
NM_003361
NP_001008390
NP_003352
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
UMOD-002ENST000003961342408673 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS61876B3KXM9 I3L1A9 P07911
Q8NHW8
NM_001278614
NP_001265543
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
UMOD-008ENST000005706892315640 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10583B3KXM9 I3L1A9 I3L1M3
I3L2J2 I3L4B0 I3L4Y6
P07911 Q8NHW8
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
UMOD-001ENST000003961382399689 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B3KXM9 I3L1A9 I3L1M3
I3L2J2 I3L4B0 I3L4Y6
Q8NHW8 X6RBG4
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
UMOD-017ENST00000574195737161 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L3Z4 Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-011ENST00000571174589125 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L1M3 I3L2J2
I3L4B0 I3L4Y6 Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-009ENST00000577168559138 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L2J2 I3L2K2
I3L4B0 I3L4Y6 Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-015ENST0000057097254629 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8NHW8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-018ENST00000573567545161 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L3E0 Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-016ENST0000057654654386 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L4B0 Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-014ENST0000057075753788 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L2J2 I3L4B0
Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-012ENST00000576688526103 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L2J2 I3L4B0
I3L4Y6 Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-019ENST00000570331663No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 3 Coding exons: 3 Transcript length: 559 bps Translation length: 138 residues

Transcript Support Level

4

Ensembl version

ENST00000577168.1

Type

Putative protein coding

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays