Description

uromodulin [Source:HGNC Symbol;Acc:HGNC:12559]

Location
Gene

This transcript is a product of gene ENSG00000169344

This gene has 13 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
UMOD-201ENST000003025092477640 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10583B3KXM9 I3L1A9 I3L1M3
I3L2J2 I3L4B0 I3L4Y6
P07911 Q8NHW8
NM_001008389
NM_003361
NP_001008390
NP_003352
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
UMOD-002ENST000003961342408673 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS61876B3KXM9 I3L1A9 P07911
Q8NHW8
NM_001278614
NP_001265543
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
UMOD-008ENST000005706892315640 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS10583B3KXM9 I3L1A9 I3L1M3
I3L2J2 I3L4B0 I3L4Y6
P07911 Q8NHW8
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
UMOD-001ENST000003961382399689 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B3KXM9 I3L1A9 I3L1M3
I3L2J2 I3L4B0 I3L4Y6
Q8NHW8 X6RBG4
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
UMOD-017ENST00000574195737161 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L3Z4 Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-011ENST00000571174589125 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L1M3 I3L2J2
I3L4B0 I3L4Y6 Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-009ENST00000577168559138 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L2J2 I3L2K2
I3L4B0 I3L4Y6 Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-015ENST0000057097254629 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q8NHW8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-018ENST00000573567545161 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L3E0 Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-016ENST0000057654654386 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L4B0 Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-014ENST0000057075753788 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L2J2 I3L4B0
Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-012ENST00000576688526103 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1A9 I3L2J2 I3L4B0
I3L4Y6 Q8NHW8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

UMOD-019ENST00000570331663No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 12 Coding exons: 11 Transcript length: 2,408 bps Translation length: 673 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS61876

Uniprot

This transcript corresponds to the following Uniprot identifiers: P07911

Transcript Support Level

2

Ensembl version

ENST00000396134.4

Type

Novel protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays