Description

gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]

About this transcript

This transcript has 2 exons, is annotated with 10 domains and features, is associated with 73 variations and maps to 10 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
GBX2-001ENST000003063182123348aaENSP00000302251
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2515P52951 NM_001485
NP_001476
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
GBX2-003ENST000005511051307222aaENSP00000448747
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VY47 NP_001288616
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
GBX2-002ENST00000465889896No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 2 Coding exons: 2 Transcript length: 2,123 bps Translation length: 348 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS2515

Uniprot

This transcript corresponds to the following Uniprot identifiers: P52951

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000306318.4

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays