Description

tubulin, alpha 1a [Source:HGNC Symbol;Acc:HGNC:20766]

Synonyms

B-ALPHA-1, FLJ25113, TUBA3

Location
Gene

This transcript is a product of gene ENSG00000167552

This gene has 9 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
TUBA1A-001ENST000003010711915451 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8781F8VQQ4 F8VRK0 F8VRZ4
F8VWV9 F8VX09 F8VXZ7
Q71U36
NM_006009
NP_006000
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
TUBA1A-002ENST000002957661887451 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58227F8VQQ4 F8VRK0 F8VRZ4
F8VWV9 F8VX09 F8VXZ7
Q71U36
NM_001270399
NP_001257328
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
TUBA1A-006ENST000005507671384416 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58226F8VQQ4 F8VRK0 F8VRZ4
F8VWV9 F8VX09 F8VXZ7
Q71U36
NM_001270400
NP_001257329
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TUBA1A-011ENST00000546918984231 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VXZ7 F8W0F6 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TUBA1A-009ENST00000547939946219 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VQQ4 F8VRK0 F8VRZ4
F8VWV9 F8VX09 F8VXZ7
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TUBA1A-010ENST0000055081165026 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VXZ7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TUBA1A-008ENST00000552924628112 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VRK0 F8VRZ4 F8VWV9
F8VX09 F8VXZ7
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TUBA1A-014ENST00000550254696No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TUBA1A-015ENST00000548363673No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 2 Coding exons: 1 Transcript length: 650 bps Translation length: 26 residues

Transcript Support Level

4

Ensembl version

ENST00000550811.1

Type

Putative protein coding

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays