Description

matrix metallopeptidase 10 [Source:HGNC Symbol;Acc:HGNC:7156]

Synonyms

STMY2

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 78 variations and maps to 7 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
MMP10-001ENST000002794411758476aaENSP00000279441
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8321P09238 NM_002425
NP_002416
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

MMP10-002ENST00000539681581181aaENSP00000441485
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5GYX7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 4 Coding exons: 4 Transcript length: 581 bps Translation length: 181 residues

Transcript Support Level (TSL)

TSL:3

Ensembl version

ENST00000539681.1

Type

Novel protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays