Description

sphingomyelin phosphodiesterase 1, acid lysosomal [Source:HGNC Symbol;Acc:HGNC:11120]

Synonyms

ASM

Location
Gene

This transcript is a product of gene ENSG00000166311

This gene has 10 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
SMPD1-001ENST000003422452452 bp631 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44531E9PL59 P17405 NM_000543
NP_000534
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SMPD1-008ENST000005272752188 bp630 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS31409E9PL59 P17405 NM_001007593
NP_001007594
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SMPD1-004ENST000005262801344 bp317 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PL59 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
SMPD1-009ENST00000530395447 bp53 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PL59 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
SMPD1-007ENST000005344052446 bp402 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E9LUE9 E9PL59 E9PQT3
-
SMPD1-002ENST000005331232211 bp366 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E9PL59 G3V1E1 Q8IUN0
-
SMPD1-003ENST000005313031451 bp171 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E9PPK6 -
SMPD1-010ENST00000533196425 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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SMPD1-006ENST00000531336650 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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SMPD1-005ENST00000532367409 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 5 Coding exons: 3 Transcript length: 2,211 bps Translation length: 366 residues

Ensembl version

ENST00000533123.2

Type

Known nonsense mediated decay

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays